Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11633 ATGTTCAGCATAGTATCTAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGGATCATTGCAGGCCGCATAGTGAAGGAAAGCTATGGTAGTGCCAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTCTACCTCCCCTTTGCCAACTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGAAAAGGCAGAAAACATTGATGGAAAAACACTCAAGAGGATCCATTGCCAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGGGAAAAAATATTATGAAAAATAGGATCTCCAAAAAGAATTCAGTAAGGAACCAATGTCAATCACATTCAGGCATTGTGGTGTCACAATATCAACCTCAAAAAACAGAAATAGCCATTTATCCAGAAAAGCCAGAATTTACATCTCAAAATTCAGGTTTACTGGCCAATACAACAAAACAAACATCTGCTATTATAAATAAACCAGCAGCTGTAACTGAACAGCATGGTATGTATGTTCACCATATACATAATCAGCAAACTGGGAAGCGCTCAGCTGAATTTGGTGAGAAATACCACCACCCTTTCACTGACTTCCAATCCAGAGAAAATGCAAATGTCATTGAGAAATACCACTCTTTCATTGCTGAGACAAACGGATTTACAGAGATGACTTATCATAGGAAGCCTTTGGCAACTGCAAATCACTTTCATCCATTGATGCCCGTGGGAGGTGCTATAAGCAGAGAAAGCTATATGCAGAGACAGTTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACAACTGCAAATTCTTACATGATTTGAGAAACAAAGGGAATGCATGA 891 0.4052 MFSIVSRSASGPPCGKRIIAGRIVKESYGSAKQQHTFTIEVLWSKGEKPLPPLCQLLIKGRNLYRLKTLRQKWEDEGKRQKTLMEKHSRGSIARADREARIQEKEKGKNIMKNRISKKNSVRNQCQSHSGIVVSQYQPQKTEIAIYPEKPEFTSQNSGLLANTTKQTSAIINKPAAVTEQHGMYVHHIHNQQTGKRSAEFGEKYHHPFTDFQSRENANVIEKYHSFIAETNGFTEMTYHRKPLATANHFHPLMPVGGAISRESYMQRQLCRHYSRGRCYFGDNCKFLHDLRNKGNA. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11633 296 PANTHER SAP DOMAIN-CONTAINING PROTEIN 1 291 - -
Seca4g11633 296 SUPERFAMILY CCCH zinc finger 265 289 IPR036855 GO:0046872
Seca4g11633 296 SMART c3hfinal6 265 290 IPR000571 GO:0046872
Seca4g11633 296 Pfam CCCH-type zinc finger 269 289 IPR041367 -
Seca4g11633 296 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Seca4g11633 296 Gene3D - 259 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11633 Seca-Chr4 256145074 256146951 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g11633 zf-CCCH_4 4.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11633 - - lja:Lj3g3v2576220.1 379.407