Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11628 ATGGCTGATTCTTCCTTTGAGATTGATTCCTACTCCTCAAGCCACCAGAGACGACACAATCCAACGCCAGTGAGTTATCGCAGTGTTTCTGGCTCTAGCTCCTTCATACCATCAAGCTCTCGAAGCAATGTCACTTCCAGAACAAGAGCAGCTCGTCGAAACAGAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGGAGAGGTTTCATGGAAGTTTGAGGCCACTGGGTGGCGTGATTATAGCACAAACTTTGGTTCTGTTCTGAGTCCATGGCCAACCAGCTCCCCATCTGATCACAGTCGTGTGTTTCATCAATCAGCAAATGACTATTACCTTTCTCGAACAAGTGGGTTCAGAGGCCTCACAAACTCATCCTATGAACATTCTTCCTATGGAAGAGTTGAACTTTGGAGCCATGTTGCTAGGGACAATGATCATAGTTACTTTGATCCTCATAGTCAGCCTCGTGGGTTCTCAAAATTGGGGATCATCAAAGAGGGGAGTATTGGAAAAGGTAAGAGTAGTCCATTGGCAGAGGAAGATGAGCTTAGCATGATAGATTATAGCATAAAAGATGAACCTTTTATTTCACCTAGTAGGATTATTCAACATAGTGATTTTGGTGGACATTATTATGTTGGTCATGGTGTGCCATCACATGGTAGCAAATCCTCTAGCCAACTTCATGGTGGTGGTTATAGTCACCATGACATGATAAAGCTTTCAGGATATGATGAAGAGGCAGAGGAGGATATGGATGAGGAAGATGCAAGTCCTCCAAAGACAGTTGGGCTTCTCAGCTTATTTAGGTACTCAACAAAGTGGGATTGGGTACTTGTGTTTGTGGGGTGTATAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTATTCTTATCTTTTTGGAGAATTGGTCAATAAGCTTTCAGGAGCAAACAATGACAAAAACCAAATGATGAATGATGTAGAGAAGATATGCAAATTTATGACCGGGTTAGCTGCAGTTGTGGTAGTTGGAGCATATTTGCAGATAACATGTTGGAGGTTAGTGGGAGAGCGATCTGCTCAGAGAATCAGAACGGAGTATTTAAGAGCGGTTCTTCGACAGGACATAAGTTTTTTTGATACAGACATCAATACTGGGGATATTATGCATGGAATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATCCATCATGTATTTACATTCATATGTGGGTACGCAGTTGGGTTTAGAAGATCATGGAAAGTCTCTCTGGTGGTATTCTCAGTCACCCCATTAACAATGTTCTGTGGTATCGCTTATAAAGCACTTTATGGTGGTCTAACAGCAAAAGAAGAAGCTTCTTACAGGACAGCTGGTAGCATTGCAGAGCAGGCCATCAGTTCAATTAGGACAGTGTTTTCTTTTGTTGCAGAAAGCCAATTGGCTGAAAAATATGATGAACTACTTCAAAAATCAGCCCCAATTGGTGCAAAACTTGGTTTTGCTAAGGGTGCAGGCATGGGTGTTATCTATTTAGTAACCTATTCAACATGGGCCTTGGCTTTCTGGTATGGCTCTATCTTAATTTCCAAGAATGAACTTAGTGGAGGTGCAGCTATTGCTTGTTTTTTTGGTGTCAATGTAGGGGGAAGAGGGTTGGCATTGGCACTTTCATATTTTGCACAATTTGCACAAGGTACTGTTGCAGCAAGCCGTGTATTCTTTATTATAGAGAGAATCCCTGAGATTGATCCCTATAGTCCTGAGGGTAGGAAGCTTTCTTCTGTTCGTGGAAGGATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGTCCTGATTCTCTCATACTTAACAACCTTAATTTGGTATTTCCATCTTCAAAAACTTTGGCATTGGTTGGTGCAAGTGGAGGTGGCAAATCCACTATCTTTGCTCTCATAGAGAGATTTTATGACCCTATTGAAGGGATTATCACCTTGGATGGTCATGATTTGAGGACACTACAAGTAAAATGGGTGAGAGATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATACTGGAAAATATAATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTTCTGCTTGCATTGCTGCTGATGCTCATAACTTCATCTCTACCCTACCACTAGGCTATGACACTCAGGTTGGAGACAGGGGTACAAAACTTTCAGGAGGTCAAAAGCAGCGAATTGCATTGGCTCGTGCAATGATCAAAGATCCTAAAATCCTTCTTTTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTTCAAAGGGCCATTGACAAGATTTCTGCAGGCAGAACAAGCATTGTCATTGCTCACAGGATAGCAACTGTGAAGAATGCTCATGCCATTGTAGTTCTTGAACATGGTTGTGTCAGTGAGATTGGTGACCATCGCCAGCTTATGGGGAAAGCTGGAACCTACTACAACCTTGTCAAGCTTGCTACTGAAGCCATTTCAAAACCTCTCTCTCAAGAAAATGGCATGCAAAAAACCAATGATTTATCCATCTATGATAAATCTGCTCCTGATGTATCAAGATCAAGATATGTAGTTGATATCTCAAGGCCTAAAGACTTAAAATCTACACTGGAGGAGAAACAAGAAGAGATGGAAGATAAGCAAAATAAAAAGCCAAGGAAATACAGACTTTCTGAGGTATGGAAACTGCAAAAACCAGAGGTTGTGATGCTATTTTTAGGATTTCTTCTGGGAATGTTAGCAGGTGCTTTTCTGTCTCTTTTTCCATTGGTTTTAGGCATATCACTTGGAGTATATTTTGACCATGACATTTCAAAGATGGAAAAAGATGTTGGGTACCTTTGTTTAGTACTTGTTGGCCTTGGATTTGGTTGTATAGTTTCCATGACAGGACAACAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACTGAGGGTTAGAAACCTCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGATTTTGATGAAAACTCCACTGGAGTATTAGTGTCAAGGCTTTCAATAGACTCAGTTACTTTTCGATCAGTATTTGGTGATCGATTTTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGCATCCTTTGCCTTTAATTGGAAACTAACCCTTGTGGCAGCTGCTGTAACTCCTTTAACTCTTGGTGCAAGTTACATAAGCTTGATCATAAATGTTGGACCACAAGTTGATAACAACTCTTATGCCAGAGCTAGCAATATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCACAGGAACAAATAGTTAAGTCCTTTGATAGAGCCTTGTCAGAACCTAGGAGAAAAGCATTGAGAAGTTCACAACTTCAAGGTCTTATATTCGGGTTCTTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCTTACCTTGTAAAACATGACAAAGCAGATTTTGAAGACGTGTATAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTTGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCAGCTACAGCAATTCCTGCAGTTCTAGATATCATGAACCGAAGGCCATTGATAGGCAATGATAGAACAAAAAGTAGGAAAGTAGAAAGATCAAAGGCATTCCAAGTAGAATTCAAAATGGTGACTTTTGCATATCCATGTAGGCCTGAGGTAACTGTGTTGAGGGATTTCTGTTTGAAGGTTAAAGGTGGAAGCACAGTGGCCTTGGTGGGGCCAAGTGGATCAGGAAAATCAACAGTCATATGGCTTACACAAAGATTCTATGATCCAGATCAAGGGAAGGTGTTGATGAGTGGGGTAGATTTGAGGGAGATTGATTTGAAGTGGTTGAGGAGGCAAATAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGATAATATTGCATTTGGAGACCCAAATGCTTCATGGGCTGAAATTGAAGCAGCTGCAAAGGAGGCTTACATTCACAAATTCATCAGTGGCCTTCCTCAGGGTTATGAAACCCAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGGCAGAAACAAAGAATTGCTATAGCAAGAGCCGTATTGAAGAAATCAAAGGTGCTTCTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAACACATCCAAGATGCCCTTAAGAAAGTTTCTAAAGAAGCAACAACCATAATAGTTGCCCATCGTCTTTCCACAATCAGAGAAGCTGACAAGATAGCTGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGAAACTCTCATGGCTTCCATTCAAAATGGTTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 4497 0.4181 MADSSFEIDSYSSSHQRRHNPTPVSYRSVSGSSSFIPSSSRSNVTSRTRAARRNRVPATPFASDDDHSWQGEVSWKFEATGWRDYSTNFGSVLSPWPTSSPSDHSRVFHQSANDYYLSRTSGFRGLTNSSYEHSSYGRVELWSHVARDNDHSYFDPHSQPRGFSKLGIIKEGSIGKGKSSPLAEEDELSMIDYSIKDEPFISPSRIIQHSDFGGHYYVGHGVPSHGSKSSSQLHGGGYSHHDMIKLSGYDEEAEEDMDEEDASPPKTVGLLSLFRYSTKWDWVLVFVGCIGALINGGSLPWYSYLFGELVNKLSGANNDKNQMMNDVEKICKFMTGLAAVVVVGAYLQITCWRLVGERSAQRIRTEYLRAVLRQDISFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGIAYKALYGGLTAKEEASYRTAGSIAEQAISSIRTVFSFVAESQLAEKYDELLQKSAPIGAKLGFAKGAGMGVIYLVTYSTWALAFWYGSILISKNELSGGAAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERIPEIDPYSPEGRKLSSVRGRIELKNVSFAYPSRPDSLILNNLNLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWVRDQIGMVGQEPILFATSILENIMMGKDNATKEEAISACIAADAHNFISTLPLGYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTSIVIAHRIATVKNAHAIVVLEHGCVSEIGDHRQLMGKAGTYYNLVKLATEAISKPLSQENGMQKTNDLSIYDKSAPDVSRSRYVVDISRPKDLKSTLEEKQEEMEDKQNKKPRKYRLSEVWKLQKPEVVMLFLGFLLGMLAGAFLSLFPLVLGISLGVYFDHDISKMEKDVGYLCLVLVGLGFGCIVSMTGQQGLCGWAGSKLTLRVRNLLFQSILKQEPGWFDFDENSTGVLVSRLSIDSVTFRSVFGDRFSVLLMGLSSAAVGLGASFAFNWKLTLVAAAVTPLTLGASYISLIINVGPQVDNNSYARASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKALRSSQLQGLIFGFFQGAMYGAYTLTLWFGAYLVKHDKADFEDVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLDIMNRRPLIGNDRTKSRKVERSKAFQVEFKMVTFAYPCRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVLMSGVDLREIDLKWLRRQIALVGQEPALFAGSIRDNIAFGDPNASWAEIEAAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAVLKKSKVLLLDEASSALDLESEKHIQDALKKVSKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHETLMASIQNGLYASLVRAETEANAFS. 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11628 1498 CDD ABC_MTABC3_MDL1_MDL2 609 846 - -
Seca4g11628 1498 Gene3D - 599 847 IPR027417 -
Seca4g11628 1498 Pfam ABC transporter 627 776 IPR003439 GO:0005524
Seca4g11628 1498 CDD ABC_6TM_Pgp_ABCB1_D1_like 286 582 - -
Seca4g11628 1498 FunFam ABC transporter B family member 1 1242 1492 - -
Seca4g11628 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 609 845 IPR003439 GO:0005524
Seca4g11628 1498 CDD ABC_6TM_Pgp_ABCB1_D2_like 939 1234 - -
Seca4g11628 1498 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Seca4g11628 1498 SUPERFAMILY ABC transporter transmembrane region 918 1232 IPR036640 GO:0005524|GO:0016020
Seca4g11628 1498 Gene3D - 1250 1492 IPR027417 -
Seca4g11628 1498 FunFam ABC transporter B family member 1 599 847 - -
Seca4g11628 1498 Pfam ABC transporter 1271 1418 IPR003439 GO:0005524
Seca4g11628 1498 SUPERFAMILY ABC transporter transmembrane region 266 594 IPR036640 GO:0005524|GO:0016020
Seca4g11628 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 930 1216 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11628 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1489 IPR027417 -
Seca4g11628 1498 PANTHER ABC TRANSPORTER B FAMILY 249 845 IPR039421 -
Seca4g11628 1498 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1103 1243 - -
Seca4g11628 1498 MobiDBLite consensus disorder prediction 1 67 - -
Seca4g11628 1498 Pfam ABC transporter transmembrane region 929 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11628 1498 Pfam ABC transporter transmembrane region 285 556 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11628 1498 MobiDBLite consensus disorder prediction 1 52 - -
Seca4g11628 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1252 1488 IPR003439 GO:0005524
Seca4g11628 1498 Coils Coil 888 908 - -
Seca4g11628 1498 Gene3D ABC transporter type 1, transmembrane domain 272 863 IPR036640 GO:0005524|GO:0016020
Seca4g11628 1498 CDD ABC_MTABC3_MDL1_MDL2 1252 1490 - -
Seca4g11628 1498 SMART AAA_5 1279 1465 IPR003593 GO:0016887
Seca4g11628 1498 SMART AAA_5 636 837 IPR003593 GO:0016887
Seca4g11628 1498 FunFam ABC transporter B family member 19 272 604 - -
Seca4g11628 1498 ProSitePatterns ABC transporters family signature. 1391 1405 IPR017871 GO:0005524|GO:0016887
Seca4g11628 1498 Gene3D ABC transporter type 1, transmembrane domain 878 1096 IPR036640 GO:0005524|GO:0016020
Seca4g11628 1498 Gene3D ABC transporter type 1, transmembrane domain 1102 1248 IPR036640 GO:0005524|GO:0016020
Seca4g11628 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11628 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 845 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11628 Seca-Chr4 256095611 256103345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11628 960 1495 Calmodulin-binding Proteins AT2G36910 37.848 7.67e-104 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11628 K05658 - gmx:100816700 2402.09