Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11626 ATGGACGACGACGACGAGATCCAGTCCCACCCGTCGCCGACGAGCGGATCCCCGGCGTCGTCGCCGAGGGCGAACGGACGGATAACGGTGACGGTTGCCGCGCCGGCGCCACAGGCGCAGCCGGCGTCGAACAGCTTGGCATTAGCGCTTCCAATTCAACAGCAGCCAAGGGGAAACAGCGCCGGTGGCGGGGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTGTTGATCGACGCTTGGGGAGAGAGGTATCTGGAACTGAGCAGGGGGAATCTGAAGCAGAAGCACTGGAAGGAGGTTGCGGAGATCGTGAGCAGCAGGGAGGACTACCTGAAGGCGCCGAAGACCGACATCCAGTGCAAGAACCGGATCGATACGGTGAAGAAGAAATACAAATCGGAGAAGGCGAAGATCGCCGCCGCGGGCGGCGGTGCAACCAGCAAATGGCCGTTCTACGAGAGATTGGACCAGCTGATCGGTCCGACCGCCAAGATCCCTGGCGTAGCCGGTCCCAGCGCCGCCGGGAACAGTAATTTGCAGCTGCAGAAAGTACCGCTAGGGATTCCGGTCGGTGTTCGCGGCGGCACGAATCAGTATCTTCCTCAAAAGCCGCAGCAGCAACATCAGCAACTTGTTCAGTTGAAGAACCAGAAGATTCAGTTCCGGCGACGCGCTCCACCGGATGATTCCGATTCGTCGGAGAGAGAAGCTCCGTCGCCAGTGTCTAGCGACAGCTTTCCGCCGGAAAGTTACGAGAGGAAGAGGGCGAGGGTGATGAATCCAAACGCCGTTAAAGGAAGGGAAGGAGGAAGGAAAGGGAAGGGAAAGGGTTGGGGAAGTGCGGTTAGGGAATTAACTCAGGCGATTCTCAAGTTTGGTGAGGCCTATGAGCAAGCCGAGACCTCGAAGCTGCAACAGGTGGTGGAGATGGAAAAGCAGAGGATGAAGTTTGCAAAGGACTTGGAATTGCAGAGAATGCAGTTTTTCATGAAGACACAGTTGGAGATTTCTCAGCTCAAGCTTGGGAGGAAAAGTGGTAACCCAAGCAATCATCATAGCAACAACAACAACAGCAACCATAACAATAACAGTGACAGTGAGTGA 1113 0.5669 MDDDDEIQSHPSPTSGSPASSPRANGRITVTVAAPAPQAQPASNSLALALPIQQQPRGNSAGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIAAAGGGATSKWPFYERLDQLIGPTAKIPGVAGPSAAGNSNLQLQKVPLGIPVGVRGGTNQYLPQKPQQQHQQLVQLKNQKIQFRRRAPPDDSDSSEREAPSPVSSDSFPPESYERKRARVMNPNAVKGREGGRKGKGKGWGSAVRELTQAILKFGEAYEQAETSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKSGNPSNHHSNNNNSNHNNNSDSE. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11626 370 MobiDBLite consensus disorder prediction 1 69 - -
Seca4g11626 370 MobiDBLite consensus disorder prediction 342 370 - -
Seca4g11626 370 MobiDBLite consensus disorder prediction 10 27 - -
Seca4g11626 370 Pfam Myb/SANT-like DNA-binding domain 68 161 IPR044822 -
Seca4g11626 370 MobiDBLite consensus disorder prediction 36 60 - -
Seca4g11626 370 Gene3D - 71 136 - -
Seca4g11626 370 MobiDBLite consensus disorder prediction 224 238 - -
Seca4g11626 370 FunFam trihelix transcription factor ASIL2 71 136 - -
Seca4g11626 370 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 35 346 IPR044823 -
Seca4g11626 370 MobiDBLite consensus disorder prediction 193 282 - -
Seca4g11626 370 MobiDBLite consensus disorder prediction 201 220 - -
Seca4g11626 370 MobiDBLite consensus disorder prediction 251 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11626 Seca-Chr4 256064611 256065723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11626 1 358 Trihelix Transcription Factor Family AT3G14180 48.864 7.58e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g11626 Myb_DNA-bind_4 7.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11626 - - gmx:100812599 491.5