Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11624 ATGAGTAAGCTTCAGAGTGATGCTCTAAGAGAAGCTATCTCAGGAATCATGGCTGATTCCAAGGAGAAAAACCGTAAATTTGTGGAGACTATTGAACTCCAAATTGGGCTGAAAAACTACGATCCTCAGAAGGATAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCATATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCCCAACATGTTGAAGAGGCAGAGAAGATAGGGTTGGACTGGATGGATGTTGAAGCCTTGAAGAAACTAAACAAAAATAAGAAATTAGTGAAGAAACTAGCCAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCAGTTATCAAACAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTGGAAGTTCCCTACACTTGTTACTCACCAAGAATCTCTTGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAACTTAAAAAGGTGCTCTGCATGGGAGTAGCTGTGGGAAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAATTGGCAAAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTACCGCGTCTTTTAA 657 0.417 MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKWKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11624 218 FunFam Ribosomal protein L10a 1 119 - -
Seca4g11624 218 CDD Ribosomal_L1 9 217 IPR028364 -
Seca4g11624 218 Gene3D - 138 216 - -
Seca4g11624 218 Gene3D - 1 119 - -
Seca4g11624 218 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 218 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Seca4g11624 218 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 212 - -
Seca4g11624 218 Pfam Ribosomal protein L1p/L10e family 22 212 IPR028364 -
Seca4g11624 218 FunFam Ribosomal protein 139 216 - -
Seca4g11624 218 SUPERFAMILY Ribosomal protein L1 3 218 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11624 Seca-Chr4 256049174 256051644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11624 1 218 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 88.073 6.88e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11624 K02865 - gmx:100808580 397.897