Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11623 ATGGCTAATGAAGGAGGAAAAAGTAATGACTTCTATGCGATCCTGGGCTTGAATAAGGAGTGCACTGAATCAGAGCTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGTCCGGGAATTTGAAGTTTGTGGAAAAAGCTAAGAAGAAATTCCAGGCAATACAACAAGCCTATTCTGTTTTATCTGACTCAAACAAAAGGTTAATGTACGATGTAGGAGTCTACGACAGTGATGATGACGAAAATGGCATGGGGGACTTCTTGAACGAAATGGTCACAATGATGAGCCAGACTGGTCCAAATGAAAATGGTGAGGAGAGCTTTGAGGAGTCGCAACAGCTGTTTGAAGAGATGTTTCAAGCAGATATTGGATTAGATGGAAGCACATCTCTTTCTGCTGCTGGTTGCTCTACTTCATCAACTTACATGACTTACACTGAAAATTCTAATTCAAACAAACGCAATTCCACTGAGATGAATTTTGGGAAGGCAGAGGATTCTTCTAACTTTGATGCCAATTACCAGAACTTCTGTTTTGGGACAGGTGAAGCACCTCCTAGATGTCGAGAAGGGAAAAGGGGGAATTCCAGAAGGAGGAGGTAA 624 0.4199 MANEGGKSNDFYAILGLNKECTESELRNAYKKLALKWHPDRCSASGNLKFVEKAKKKFQAIQQAYSVLSDSNKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTGPNENGEESFEESQQLFEEMFQADIGLDGSTSLSAAGCSTSSTYMTYTENSNSNKRNSTEMNFGKAEDSSNFDANYQNFCFGTGEAPPRCREGKRGNSRRRR. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11623 207 CDD DnaJ 10 70 IPR001623 -
Seca4g11623 207 SMART dnaj_3 9 73 IPR001623 -
Seca4g11623 207 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Seca4g11623 207 Gene3D DnaJ domain 7 135 IPR036869 -
Seca4g11623 207 MobiDBLite consensus disorder prediction 187 207 - -
Seca4g11623 207 Pfam DnaJ domain 10 78 IPR001623 -
Seca4g11623 207 PRINTS DnaJ domain signature 73 92 IPR001623 -
Seca4g11623 207 PRINTS DnaJ domain signature 12 30 IPR001623 -
Seca4g11623 207 PRINTS DnaJ domain signature 53 73 IPR001623 -
Seca4g11623 207 PRINTS DnaJ domain signature 30 45 IPR001623 -
Seca4g11623 207 PANTHER PUTATIVE, EXPRESSED-RELATED 3 182 - -
Seca4g11623 207 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Seca4g11623 207 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Seca4g11623 207 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11623 Seca-Chr4 256041904 256045902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11623 12 78 C2H2 Transcription Factor Family AT1G74250 41.791 1.55e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11623 - - lja:Lj3g3v2576120.1 336.65