Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11616 ATGGCTAATGAAGGAGGCAAAAGCAATGACTTCTATGCGATCCTGGGCTTGAATAAGGAGTGCACTAAATCAGAGCTAAGGAATGCCTATACGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGTCCGGGAATTTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTCCAGGCAATACAACAAGCCTATTCTGTTTTATCTGACTCAAACAAAAGGTTAATGTACGATGTAGGAGTCTACGACAGTGATGATGACGAAAATGGCATGGGGGACTTCTTGAATGAAATGGTCACAATGATGAGCCAGACTGGTCCAAATGAAAATGGTGAGGAGAGCTTTGAGGAGTTGCAACAGCTGTTTGAAGAGATGTTTCAAGCAGATATTGGATTAGATGGAAGCACATCTCTTTCTGCTGCTGGTTGCTCTACTTCATCTACTTACATGACTTACACTGAAAATTCTAATTCTAATAAACGCAATTCCACTGAGATAAATTTTGGGAAGGCAAAGGATTCTTCTAACTTTGATGCCAATTACCAGAACTTCTGTTTTGGGGTTAGTATATTCTACTTTTTTGTTATATTATTTCATTTGATATAA 606 0.3894 MANEGGKSNDFYAILGLNKECTKSELRNAYTKLALKWHPDRCSASGNLKFVEEAKKKFQAIQQAYSVLSDSNKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTGPNENGEESFEELQQLFEEMFQADIGLDGSTSLSAAGCSTSSTYMTYTENSNSNKRNSTEINFGKAKDSSNFDANYQNFCFGVSIFYFFVILFHLI. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11616 201 Gene3D DnaJ domain 7 135 IPR036869 -
Seca4g11616 201 CDD DnaJ 10 70 IPR001623 -
Seca4g11616 201 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Seca4g11616 201 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Seca4g11616 201 PRINTS DnaJ domain signature 30 45 IPR001623 -
Seca4g11616 201 PRINTS DnaJ domain signature 53 73 IPR001623 -
Seca4g11616 201 PRINTS DnaJ domain signature 73 92 IPR001623 -
Seca4g11616 201 PRINTS DnaJ domain signature 12 30 IPR001623 -
Seca4g11616 201 Pfam DnaJ domain 10 78 IPR001623 -
Seca4g11616 201 PANTHER PUTATIVE, EXPRESSED-RELATED 3 181 - -
Seca4g11616 201 SMART dnaj_3 9 73 IPR001623 -
Seca4g11616 201 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11616 Seca-Chr4 255995974 255999538 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11616 11 78 C2H2 Transcription Factor Family AT1G74250 41.176 3.51e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11616 - - lja:Lj3g3v2576120.1 327.405