Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11610 ATGGCTACAGCTACCAACGCCGCCGCAGCCCCGCCGCGCCAGCTCTCTCAGAAGGAAGCTGACATCCAGATGATGTTGGCTGCCGACGTCCATCTCGGCACCAAAAACTGTGACTTCCAAATGGAACGTTACATTTTCAAGCGCCGCAACGACGGGATTTACATTATAAATCTTGGGAAGACTTGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCCATTGAGAACCCTCAGGACATCATTGTTCAGTCTGCTAGGCCTTATGGACAAAGAGCCGTTCTCAAGTTTGCACAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCATTCAGTGAGGAAGCTGCCCTTGGAAACATTCCAACTATTGCTTTTTGTGACACTGATTCTCCTATGCGGTATGTTGACATTGGAATTCCTGCCAATAACAAGGGCAAACATAGCATAGGTTGTCTGTTTTGGCTTCTTGCAAGGATGGTGTTGCAGATGCGTGGCACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCAGAAGAGACCAAGCCACAAGAGGAGGAAGAAGCTACTGCTGTTGATTATGCCATTACAGACTTCAATGCAAGTGCTATTCCTGCTGATGGCCAGTGGCCTGCTGCCATTGATCAGTCATGGACTGATGCAGTTCCACAACCTATTGCAGCAGTTCCCGGTGTCAGCTGGGCAGCCCCAGAAGCTGTTGCAGGAGACTGGGGTGAGGCTGTTCCACCACCACAACAACAAATTCCTGCTCCACCCGGAGTTGAGTCTGTCCAACCATCTGGCTGGGATTAA 870 0.4977 MATATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKPQEEEEATAVDYAITDFNASAIPADGQWPAAIDQSWTDAVPQPIAAVPGVSWAAPEAVAGDWGEAVPPPQQQIPAPPGVESVQPSGWD. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11610 289 Hamap 40S ribosomal protein SA [rps-0]. 9 256 IPR027498 GO:0003735|GO:0006412|GO:0015935
Seca4g11610 289 PANTHER 40S RIBOSOMAL PROTEIN SA 12 273 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca4g11610 289 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g11610 289 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g11610 289 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g11610 289 Pfam Ribosomal protein S2 25 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g11610 289 Pfam Ribosomal protein S2 125 172 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g11610 289 Gene3D - 21 210 - -
Seca4g11610 289 SUPERFAMILY Ribosomal protein S2 17 190 IPR023591 -
Seca4g11610 289 CDD RPS2 25 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g11610 289 MobiDBLite consensus disorder prediction 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11610 Seca-Chr4 255951724 255953432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11610 4 263 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 67.133 9.52e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11610 K02998 - gmx:548014 513.842