Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11595 ATGTGTGGAGGTGCTATTATCTCCGACTTAATCCCGGCGGCGACCGGTGGTTCCCGGCGTGTGACCGCCGACATCCTCTGGCCGAATTTGAGGAAACCAAGTTCGAAGAAGCAGCTGCCTAGGAAGGCAGCACTGTTTTTGGATGATGACTTCGAGGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGAAGAGGACGAGGAAGATGATGATTTGCTGGTCGGTGTTAAGGGCTTTGCCTTTGATTCCACCAAGACCAAGCCTTCCAAGTCCCTCTCTCGGGAAGGATCAACTGCTGCAAAATCTGTGGAATTCAGTGTCCAAGCTGATGAGTCTGCTAAGAGAAAGAGGAAGAATCAATATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAGGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGGGGCTGCAGGTTCTTCCTCCAAACGTGTCAAGGCCAATCCACAGAAGGAAAATATCAACTCTGTTAAGCCCAAAGTGAACAAGATGTTCAATTTTGGTGACAACCTGGAGGACTACTTCTCCATGGATCAGATGGAACAGAAGCCACTGGTTAACCAATATGCTAACATGGGCCCCTTCCCTGGAAATGGAGTTCAGCTCTCACCCCTTGCTGCATCTACTGATGTCACCCCATATTTCAGCTCGGAACATTCGAGCAATTCATTTGATTATTCTGATCTTGGATGGGGTGAACAGGGCCCAAAGACTCCTGAGATCTCATCCATGCTTTCAGCTCCTCTGGAAGGTGAATCTCAATTTGTGCAGAGTGCTAATCAGCAGAATAACCTGCAGTCTGACTCCCAGGAACTGCTTCCCATGCAAGATGATTCTGCAAAGTCGCTATCTGAGGAGCTTGCAGATATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTATCTTGATGGAAGTTGGGATGATGCTTCATTGGCTTCCTTGCTGAATGGAGATGCAACTCAGGATGGTGGAAACTCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATTGCAGGGGGGGTTTTCTGA 1164 0.4897 MCGGAIISDLIPAATGGSRRVTADILWPNLRKPSSKKQLPRKAALFLDDDFEAGFREFKDDSDFEEDEEDDDLLVGVKGFAFDSTKTKPSKSLSREGSTAAKSVEFSVQADESAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDGAAGSSSKRVKANPQKENINSVKPKVNKMFNFGDNLEDYFSMDQMEQKPLVNQYANMGPFPGNGVQLSPLAASTDVTPYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQSANQQNNLQSDSQELLPMQDDSAKSLSEELADIESQLKFFETPYLDGSWDDASLASLLNGDATQDGGNSMNLWSFDDLPSIAGGVF. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11595 387 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Seca4g11595 387 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Seca4g11595 387 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Seca4g11595 387 MobiDBLite consensus disorder prediction 265 287 - -
Seca4g11595 387 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Seca4g11595 387 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Seca4g11595 387 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Seca4g11595 387 PANTHER DNA-BINDING DOMAIN 94 301 IPR044808 GO:0003700|GO:0009873
Seca4g11595 387 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Seca4g11595 387 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Seca4g11595 387 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11595 Seca-Chr4 255800224 255803762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11595 1 387 AP2-EREBP Transcription Factor Family AT3G14230 44.096 2.15e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g11595 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11595 K09286 - gmx:100818646 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11595 4 255800224 255803762 Seca4g11595 4 255800224 255803762 ECH