Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11592 ATGGAAGCCAAACCTACTGGAGAAATGTTCAGAAGCCAAAATTGCTCTCACTCTTTCTGTGATGACTGTGTTGGAAGATATGTGGCTGCAAAGATTCAGGAGAATATATCAAATATCAAATGCCCTGACCCCAAATGCAGGGGAGTTTTGGAGCCTCATCACTGCCGTTCAATTGTCCCAAAGGATGTGTTTGATCGATGGGAAAATGCACTTTGTGAGAATGTGGTGCTTGGATCACAGAAATTTTACTGTCCTTTTAAGGATTGTTCAGCTGTGATGTTACATGAGGAAGAGGAAACTGTGACTGTGTCAGAATGTCCACATTGTCATAGATTGTTCTGCGCACAGTGCAAGGTTTCGTGGCATGCAGGAATTGATTGTAGGGAGTTTCGGAGCTTGAAAGTGGGAGAACGAGAGAGGGAAGATCTTATGGTAATGGAACTTGCCAAAAACAAGAATTGGAGAAGATGTCCCAGATGCAAATTCTATGTGGAAAAAACTGCGGGATGTTCACACATTTCATGCAGAGATAAATATCAACATTGCAAACTCTATGCTCTGAGCAAAAAATTTTTGGTGGGTATGGAGGGAACTTCATCGGCCTCTACTCATGATGATCATCTCTTAGTTGATGACTTCTTTTCAGCCCTCTACGATTCTGAAGAAGTATTTCCAATCTCTGATGAGAATTTTGCAGAAGAACTGAAGCTTCAGCAAGTGGATGTAGAAGCTGACACCTTTTTGAAAACCCTCAAGGGGAAACAGAAAGTGACTGGTGAATCTTCTCAAGTCTACTGTGCTATTTGCATGGAAGGAAAACCTGCTGGAGAAATGTTCAGAAGCCAAAATTGCTCTCACTCTTTCTGTGATGACTGTGTTGGAAGATATGTGGCTGCAAAGATTCAGGAGAATATGTCAATGATCAAATGCCCTGACCCTAAATGCAGGGGTGTTTTGGAGCCTCATCACTGTCGTTCAATTGTTCCAAAAGAGGTGTTTGATCGATGGGAAAATGCACTTTGTGAGAATGTGGTGCTTGGATCACAAAAATTTTACTGTCCTTTTAAGGATTGTTCAGCTATGCTTGTGAATGATGAAGAGGAAGTTGTGTCTGCTTCGGAATGTCCACATTGTAATCGATTGTTCTGTGCACAGTGCAAGGTTTCATGGCTTGCAGGAATTGATTGTAGGGCGTTTCAAGGCTTGAAAAAAGGAGAACGAGAGAGGGAAGATCTTATGGTAATGGAAAAGATGTCTCAGATGCAATTTCTATGTGGAAAAAATTGTGGGATGTTCACGCATTTTATGCAGGTAGGTGATTGTGCTGTATATATGTTTTCAACCAATTCTTCTTTCCACTTTCTTTGA 1368 0.413 MEAKPTGEMFRSQNCSHSFCDDCVGRYVAAKIQENISNIKCPDPKCRGVLEPHHCRSIVPKDVFDRWENALCENVVLGSQKFYCPFKDCSAVMLHEEEETVTVSECPHCHRLFCAQCKVSWHAGIDCREFRSLKVGEREREDLMVMELAKNKNWRRCPRCKFYVEKTAGCSHISCRDKYQHCKLYALSKKFLVGMEGTSSASTHDDHLLVDDFFSALYDSEEVFPISDENFAEELKLQQVDVEADTFLKTLKGKQKVTGESSQVYCAICMEGKPAGEMFRSQNCSHSFCDDCVGRYVAAKIQENMSMIKCPDPKCRGVLEPHHCRSIVPKEVFDRWENALCENVVLGSQKFYCPFKDCSAMLVNDEEEVVSASECPHCNRLFCAQCKVSWLAGIDCRAFQGLKKGEREREDLMVMEKMSQMQFLCGKNCGMFTHFMQVGDCAVYMFSTNSSFHFL. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11592 455 CDD BRcat_RBR_unk 78 130 - -
Seca4g11592 455 ProSiteProfiles TRIAD supradomain profile. 262 455 IPR044066 -
Seca4g11592 455 ProSiteProfiles Zinc finger RING-type profile. 266 314 IPR001841 -
Seca4g11592 455 CDD BRcat_RBR_unk 347 399 - -
Seca4g11592 455 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Seca4g11592 455 FunFam RBR-type E3 ubiquitin transferase 1 78 - -
Seca4g11592 455 ProSiteProfiles TRIAD supradomain profile. 1 220 IPR044066 -
Seca4g11592 455 Pfam IBR domain, a half RING-finger domain 336 396 IPR002867 GO:0008270
Seca4g11592 455 Pfam IBR domain, a half RING-finger domain 67 127 IPR002867 GO:0008270
Seca4g11592 455 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 182 IPR031127 GO:0004842|GO:0016567
Seca4g11592 455 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Seca4g11592 455 SMART ibrneu5 65 127 IPR002867 GO:0008270
Seca4g11592 455 SMART ibrneu5 334 396 IPR002867 GO:0008270
Seca4g11592 455 SUPERFAMILY RING/U-box 3 74 - -
Seca4g11592 455 SUPERFAMILY RING/U-box 138 184 - -
Seca4g11592 455 FunFam RBR-type E3 ubiquitin transferase 261 347 - -
Seca4g11592 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 347 IPR013083 -
Seca4g11592 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Seca4g11592 455 SUPERFAMILY RING/U-box 260 343 - -
Seca4g11592 455 SUPERFAMILY RING/U-box 74 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11592 Seca-Chr4 255596768 255601301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11592 259 422 C3H Transcription Factor Family AT2G19610 21.387 4.27e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11592 K11975 - eus:EUTSA_v10021980mg 376.711