Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11590 ATGGCTTCTTCTTCTCAAGGAAACACATCGAAAAAGCCAATCACACGGAGGCGAAAGATTGAGATCAAGAAAGTGGAAGAACTCAACAAGCGTCACGTGACTTTCTCGAAACGGAAGCTTGGCCTTTTCAACAAAGTCACTGAGCTCTCCATTCTATGCCAAGCAGAAACTGCATTGATCGTTACCTCTCCAAACGGCAAGCTCTATGCATGTGGTTATCCAAACCCTGATGTTGTCATAAAACGGTTTCTTACCGAAGGTCCACCTGTTGAGGAAAAAAGGCAGCAGGAGGAAACGGTTGAAATCCTAAGGGTACAATATGAGGCCATCCAAGAACAATTGAAAGCAGAGAAGAAGAACCTTCAAGAAATCACAGAAGCACAAAAGAGTAGTTCTTGCTTCCCTTCTTGGTGGAATCTCTCCATTGAGGATATGAATTTGGAGTCTCTTGAACACTTTATGGAATCCATGAAACTTTTGAGGCTCAACCTTGTTGCTTCTATGCAACAGAAGACCTTCGCTCCGCTCCAAGAGAAGATGTTCCCTCCACTCCTACCGTTACCAATTTCGGTAGCTCCACCACCAACTGTACCAAATTGGTCGTTGATTGGTGCGCAACAACAACTACAGCATTGGAAGAGTCTTGGCGGTGTTGGTAGCAGCAGCAGCAGCAGCTCTCCTGCTAGTTTCATGATTCCTAATTTTGGCAGTTATTAA 717 0.4463 MASSSQGNTSKKPITRRRKIEIKKVEELNKRHVTFSKRKLGLFNKVTELSILCQAETALIVTSPNGKLYACGYPNPDVVIKRFLTEGPPVEEKRQQEETVEILRVQYEAIQEQLKAEKKNLQEITEAQKSSSCFPSWWNLSIEDMNLESLEHFMESMKLLRLNLVASMQQKTFAPLQEKMFPPLLPLPISVAPPPTVPNWSLIGAQQQLQHWKSLGGVGSSSSSSSPASFMIPNFGSY. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11590 238 PANTHER MADS BOX PROTEIN 17 164 - -
Seca4g11590 238 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Seca4g11590 238 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Seca4g11590 238 Gene3D - 27 107 IPR036879 GO:0003677|GO:0046983
Seca4g11590 238 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Seca4g11590 238 Coils Coil 93 127 - -
Seca4g11590 238 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Seca4g11590 238 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Seca4g11590 238 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Seca4g11590 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11590 Seca-Chr4 255586876 255587592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11590 17 161 Type I MADS-box Gene Family AT5G60440 35.948 1.09e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g11590 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11590 - - gmx:100817750 209.92