Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11588 ATGTTTCAGTTTCATCCTCAAGGAGCTCCCAAACAAACTTGTACTCTGCTTGCTGTTACCTGTGCCGCTAGTTTTGTTGAGCACAGGCCCCCACAGGATCAGCGCAAATACCCTTTCCCTGAGTTGGTTTCTGCGGGGCGTCTTGAGGTTCAAACTTTGTGCAATCCAGAAAGGGAACAGTTTCGTAAAGTTCTTGAGTCGTATCAACCAAATTTTGTATACTTACAAGGAGAGCAGCTAGCGAATGAGGAAGTTGGTTCACTGGTTTTGCAAGGTGTGGAATTATCCACCCCTGAAGCTATAGTAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTTTATTTAGAAATCCCAAATGGAGAAAGTTTTGCGGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATCCTTTTTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAAAGTTCATCTACGCATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTTCAAAATGATCAAGTACTTCCTACTGATGACAATGATGCTAATAGTGAGATGGGGCCACACCTTCTTGGAGATTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGGTGAAGAAGATGACGAAGAAGGTTCCTCAGACAGTCTTCCTGCTATAAAGATACACGACGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCTCTGTTGATGAGTCATTGCTGAGATCTTTGGAGGACGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCGGCTGCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACTTGCAGTTCTGCACATATCTCACTTCTGGTATCCGGCAGTGCACAGACTTGTTTTAATGATCAGCTCCTGGAGAATCATATAAAAAATGAGATAATAGAGAAGAGTCAGCTAGCTCATGCACAACTCAACCAAGGAAACAAACAGAGTATCTCAGAACCTCGTAGATCTGCTTCGATTGCTTGTGGAGCAACTGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCATTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTGTTCAAGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAACGCTTACTTTTCTTCTATCAAAGCGATGAGAAAGATAGCTGTGCAAACAACAATATAGTTTTCAGCAGTACCCCTGGTTGGTTGAAACCACCCCCTCCTACAAGAAAGAGGTGTGAACCAAGTCAAGGGGCTAGCCATGGTCTTCATGATGGTGCCTTTGCAGGGCAGGGTGCTGTTAAAAAAGTAGATGACGAGGAAAAGGATAGAAAAATGGTAAATGGGATCAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTTTCTGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGATAGATGGCCTTGATGGTGCCCAAGTTGAGGCTAATTTGCCACTTGTTGCCCCTAAGCGCAATAGTATGGGATCATCATCTGCAACACAGAGAAAATCGTTTTCAAGCTCAGCTCAGTCTAAGCAGGTTATTTCCTTGAATCCATTACCTTTGAAGAAACATGGTTGTGGCAGAGGTCCAGTACAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGTCGACTGATTCCTCAAGGAGGGATTACCGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACAAGGGGAGGCTTTCATGTTGGCAACGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACGACAACCAACAGAATGACTGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAAAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCAATGTCATCACGACCCCTCTGA 2340 0.4385 MFQFHPQGAPKQTCTLLAVTCAASFVEHRPPQDQRKYPFPELVSAGRLEVQTLCNPEREQFRKVLESYQPNFVYLQGEQLANEEVGSLVLQGVELSTPEAIVELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNPFSCYAACHFRQAFFSVVQSSSTHTWDAFHLARASFELYCVQNDQVLPTDDNDANSEMGPHLLGDCLKINVDPPEIGEEDDEEGSSDSLPAIKIHDDEVNLRFLICGAPSSVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLAHAQLNQGNKQSISEPRRSASIACGATVFEICMKLPQWALQILRQLAPDVSYRSLVALGIASVQGLPIASFEKDDAERLLFFYQSDEKDSCANNNIVFSSTPGWLKPPPPTRKRCEPSQGASHGLHDGAFAGQGAVKKVDDEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFCGPSEIDGLDGAQVEANLPLVAPKRNSMGSSSATQRKSFSSSAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGITEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRPL. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11588 779 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 776 IPR042293 -
Seca4g11588 779 SUPERFAMILY ARID-like 593 708 IPR036431 GO:0003677
Seca4g11588 779 MobiDBLite consensus disorder prediction 549 571 - -
Seca4g11588 779 Gene3D - 591 696 IPR036431 GO:0003677
Seca4g11588 779 Pfam ARID/BRIGHT DNA binding domain 596 693 IPR001606 GO:0003677
Seca4g11588 779 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Seca4g11588 779 SUPERFAMILY FYVE/PHD zinc finger 689 757 IPR011011 -
Seca4g11588 779 SMART bright_3 594 698 IPR001606 GO:0003677
Seca4g11588 779 SMART ARID_2 590 693 - -
Seca4g11588 779 CDD PHD_ARID4_like 703 754 - -
Seca4g11588 779 CDD ARID 595 693 - -
Seca4g11588 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 760 IPR013083 -
Seca4g11588 779 MobiDBLite consensus disorder prediction 445 473 - -
Seca4g11588 779 MobiDBLite consensus disorder prediction 548 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11588 Seca-Chr4 255562607 255572663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11588 4 768 ARID Transcription Factor Family AT3G43240 61.061 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca4g11588 ARID 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11588 - - gmx:100816540 1417.52