Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11587 ATGGAGGATCCGAAGATATCGGCGTACTACCAGACGAGGATGGCTCACTTCGGCGTCGTCAGCACCGAGTGGCTCGCTCAGGCCCAGTCTGCCACTACCAACCCTCCCCCACTCCCACCATCATCCCGCACCGGCGACAGCGACACCAATTTCTCGGTCATCGATGAGTTCAACACGTGGCGGAGCAACCCCGATTTGGCGGAGGCCGTCGCCGCCATTCGCGCCCTCGCCGCCGTCATCAGCTCCAGCAAGGCCTCCACCATGATGCAGCTCGAAATCGAGCTCAAAAACGCCTCCGATTCTCTCAAATCATGGGATACGACCTCTATCTCTTTGACAGCAGCCTGTGATCTGTTTATGCGATATGTGACTAGAACTTCTGCTTTGGAATATGAAGACTTCAATTCAGCTAAATCTCGCTTGATTGAACGCGCTGAAAAGTTTGGGGAAATCTCCTACAAGGCTCGCAAGATTATTGCGATGCTGAGTCAAGATTTTATATTTGATGGTTGCACCATTTTGGTTCATGGTTTTTCCAGAGTAGTCTTGGAAGTTCTTAAACTGGCCGCACAAAATAAGAAACTATTTCGGGTCTACTGCACAGAGGGGAGACCAGACCGAACAGGTTTAAGGTTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTAGTAATAGACTCTGCTGTGGCATATACTATGGATGAGGTGGATATGGTATTTGTTGGGGCTGATGGAGTGGTTGAAAGTGGTGGTATAATCAACATGATGGGGACATACCAAATTGGGTTGGTTGCAAAGAGTATGAATAAGCCAGTTTATGTGGCAGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCTCTAGACCAAAAGGATTTGGCCCCTGCCATACGCCCAGTTGATTTCGGTGTACCTATTCCATCCAAGGTTGAGGTTGAATGTTCTGCACGGGATTATACTCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGCGTTCTTACTCCATCAGTTGTTAGTGATGAGCTTATTCAGCTATACTTATAG 1053 0.4815 MEDPKISAYYQTRMAHFGVVSTEWLAQAQSATTNPPPLPPSSRTGDSDTNFSVIDEFNTWRSNPDLAEAVAAIRALAAVISSSKASTMMQLEIELKNASDSLKSWDTTSISLTAACDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVLEVLKLAAQNKKLFRVYCTEGRPDRTGLRLSNELAKLDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIGLVAKSMNKPVYVAAESYKFARLYPLDQKDLAPAIRPVDFGVPIPSKVEVECSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11587 350 Gene3D - 48 151 IPR042528 -
Seca4g11587 350 FunFam Translation initiation factor eIF-2B subunit alpha 49 151 - -
Seca4g11587 350 Gene3D - 154 350 IPR042529 -
Seca4g11587 350 Coils Coil 88 108 - -
Seca4g11587 350 FunFam Translation initiation factor eIF-2B subunit alpha 154 350 - -
Seca4g11587 350 Pfam Initiation factor 2 subunit family 65 338 IPR000649 GO:0044237
Seca4g11587 350 MobiDBLite consensus disorder prediction 28 47 - -
Seca4g11587 350 SUPERFAMILY NagB/RpiA/CoA transferase-like 52 349 IPR037171 -
Seca4g11587 350 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 18 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11587 Seca-Chr4 255557735 255560499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11587 6 350 Eukaryotic Initiation Factors Gene Family AT1G53880 81.739 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11587 K03239 - gmx:102669842 590.497