Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11576 ATGAGCAAGAAGAAGCTCTTGTTGTCCCTCTTCTGCACCCTTCTTTTAGTTGCCTCCGTCGTCGCCATTGTCGCCGGAGTAAAGAAAAACTCTTCCTCCAACAATGACTCTTCCCCTTCATCTTCTCTCTCCCTCTCCCACCAATCCCACACCATCATCAAAAGCGCTTGCAGCTCCACATTCTACCAAGACCTCTGTTTCTCTGCCATTTCCTCTGAACCAGGCGTCACTCACAAAGTCACAACCCACAAAGACGTCATTTCCTTATCCCTCAACATCACCACCAGAGCCGTCGAACACAACTTCTTCACCGTCGAGAAGCTTCTCACCACACGAAAGGGCCTCACTGAGAGAGAGAAAACCGCTCTCCATGATTGCTTAGAAACCATTGATGAAACCCTCGACGAGCTCAAACAAGCCCAAAAAGATCTCGAACTGTACCCTAACAAGAAAACACTCTACCAACACGCTGATGACCTTAAAACACTCATCAGTGCCGCCATAACCAATCAAGTTACTTGCTTGGATGGTTTCTCTCATGATGGTGCTGATAAGCGCGTCAGAAAGGTCCTTGAACAGGGACAGGTCCACGTGGAGCATATGTGTAGCAATGCCTTGGCTATGACCAAGAACATGACGGACTCTGATATAGCAAACTATGAACAGAAGATGATGCTGAAAACGAGAAAGCTGATGGAAACAGAGGAAACAGGGGAAGGTGAAGTGAAGTGGCCGGAGTGGATTTCTGCGGCTGATAGGAGGCTTCTTCAGTCGACGGCGGTGAAGGCTGATGTGGTGGTGGCGGCGGATGGGAGTGGGGACTTCAAGACGGTGTCGGCTGCGGTGGCTGCGGCGCCGGAGAAGAGTAGCAAGAGGTATGTGATAAAGATAAATGCAGGGGTGTATAGAGAGAATGTGGAGGTGCCAAAGAAGAAAACGAATATAATGTTCTTGGGAGATGGTAGAACCAACACTATTATCACTGGTAGCAGAAATGTTGTTGATGGAAGTACCACTTTTCACTCTGCCACTGTCGCCGTTGTGGGTGGACAATTTTTGGCACGAGACATAACTTTCCAAAACACAGCAGGTCCCTCAAAGCACCAAGCTGTGGCCCTAAGAGTTGGTGCGGACCTTTCAGCCTTTTACAATACCCTTTATGTTCACAACAATCGCCAATTCTTTGTGAATTGCCTTATAGCAGGGACAGTTGATTTTATCTTTGGTAATTCAGCTGTGGTGTTCCAAGATTGTGACATTCATGCTAGGCGTCCTGATTCAGGCCAAAAGAACATGGTCACAGCACAAGGCAGGGTTGATCCTAACCAAAACACTGGTATTGTAATCCAAAAGTGTAGAATTGGTGCTACTAAGGACTTGGAAGCTGTGAAGAATAGTTTCCCTACTTATCTTGGAAGGCCATGGAAAGAGTACTCTAGGACTGTGATTATGCAGAGTAGTATTAGTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAATGGGAATTTTGCTTTGAACACATTGGTTTATAGAGAGTATCAGAATACTGGGCCTGGTGCTGGAACTTCAAAGAGGGTTACATGGAAAGGGTTTAAGGTCATTACAAGTGCTTCTGAGGCCCAGCCTTTTACTCCTGGAAGCTTCATTGCGGGCTCTAACTGGGGGTACGGTAAAGTAGATGAGATAGAGCAACAAGCCTTTCAGAAGAAGACACGTAAGCGTGTGATAATCCTGATCGTCTCCTCCTTAGTTCTATTAGCGTTGATCATCGCCGCGGTAGTAGGAGTCGTCGTACACAAGCGCAACACCTCATCATCCTCCCCATCCGACTCGGCTCCCCAGACCGAGTTAACTCCGGCCGCGTCACTCAAAGCGGTTTGCGAGGTGACTCAGTACCCTGACTCGTGCTTCGCCACTATCTCCTCCCTCCCAAACTCCAACACCACCGACCCCGAAACACTATTCAAACTCTCCCTCCGCGTCGCCATTGATGAACTCTCGAAGCTCAAGAGCCTCCCTTCGAAGCTCAATGCCAATGGCGACAAGCGCCTCCAGAAGGCGATTGATGTTTGCGCCGTCGTCTTCGACGACGCTCTGGACCGCCTCAACGACTCGATCTCCTCGATCTCTAGCGCCGGAAAGATCCTCTCTCCGACGACGATCGATAACGTCAAGACCTGGCTCAGTGCCGCCATCACGAACCACGACACGTGCCTGGACGCCATCGGCGAGTTGAACTCCACCGCCGCAAACGGTGTTCTCCAGCAAATGGAAGCCGCAATGAAGAACTCCACGGAGTTCTCGAGTAACAGTTTGGCGATCGTGAGCAGGATCCTAGGGTTGCTGGCGAAGATCGGCGCGCCGCTCCACAACCGGAGGCTGCTCGGAGAGTTCCCGGAGTGGGTGGGAGCGGCGGAGAGGAGGCTGCTGGCAGCGGATGGCAACGAGACGAAGCCGGACGCGGTGGTGGCGAAGGACGGGAGTGGACAGTACACGACGATCGGAGAGGCGCTGAAGGCGGTGAAGAAGAAGAACGAGAAGAGATTCGTGGTGTATGTGAAGAAAGGAGATTACGTGGAGAACATCGATTTGGACAAGCATACCTGGAATGTGATGATCTACGGCGATGGCATGACGGAAACCGTCATCTACGGTAGCCGGAATTTCATGGACGGCACGCCCACTTTTGAAACTGCCACTTTCGCTGTTAAGGGCAAGGGATTCATTGCCAAAAACATCAAGTTTGTGAACACTGCAGGAGCATCTAAGCACCAGGCTGTGGCATTGCGTTCTGGCTCGGATCGCTCAGTGTTTTACAGGTGCTCATTTGATGGCTTTCAGGACACCCTTTATGCACATTCCATGCGCCAGTTCTACCGTGAGTGTGAAATTACAGGTACCATAGACTTCATATTTGGTAATGGAGCTGCTATCTTCCAAAATTGCAAAATCATGCCTAGACAGCCTCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCCAACCAGAACACTGGAATTGTAATCCAAAAATCAACGATCACTACCCTAGACAATGACAATCTCACTGCTCCTACGTACCTTGGTAGGCCATGGAAGGATTACTCCACCACTGTTATCATGCAAACTGATATTGGGTCATTCTTGAAACCAGTAGGGTGGATGAGTTGGGTTGCCAATGTGGACCCTCCAAGTACCATCCTCTATGCTGAATACCAGAACAGTGGGCCAGGATCAGATGTGTCCCAGAGGGTAAAATGGACTGGTTACAAGCCCACTCTCGCGGACGATGAGGCAGGGAAGTTCACGGTGGAGTCCTTTATCCAAGGCCCTGAGTGGTTGCCAAATGCTGATGTGCAGTTTGAGTCTACTTTGTGA 3393 0.5004 MSKKKLLLSLFCTLLLVASVVAIVAGVKKNSSSNNDSSPSSSLSLSHQSHTIIKSACSSTFYQDLCFSAISSEPGVTHKVTTHKDVISLSLNITTRAVEHNFFTVEKLLTTRKGLTEREKTALHDCLETIDETLDELKQAQKDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHDGADKRVRKVLEQGQVHVEHMCSNALAMTKNMTDSDIANYEQKMMLKTRKLMETEETGEGEVKWPEWISAADRRLLQSTAVKADVVVAADGSGDFKTVSAAVAAAPEKSSKRYVIKINAGVYRENVEVPKKKTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAVVGGQFLARDITFQNTAGPSKHQAVALRVGADLSAFYNTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKNSFPTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITSASEAQPFTPGSFIAGSNWGYGKVDEIEQQAFQKKTRKRVIILIVSSLVLLALIIAAVVGVVVHKRNTSSSSPSDSAPQTELTPAASLKAVCEVTQYPDSCFATISSLPNSNTTDPETLFKLSLRVAIDELSKLKSLPSKLNANGDKRLQKAIDVCAVVFDDALDRLNDSISSISSAGKILSPTTIDNVKTWLSAAITNHDTCLDAIGELNSTAANGVLQQMEAAMKNSTEFSSNSLAIVSRILGLLAKIGAPLHNRRLLGEFPEWVGAAERRLLAADGNETKPDAVVAKDGSGQYTTIGEALKAVKKKNEKRFVVYVKKGDYVENIDLDKHTWNVMIYGDGMTETVIYGSRNFMDGTPTFETATFAVKGKGFIAKNIKFVNTAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSMRQFYRECEITGTIDFIFGNGAAIFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLDNDNLTAPTYLGRPWKDYSTTVIMQTDIGSFLKPVGWMSWVANVDPPSTILYAEYQNSGPGSDVSQRVKWTGYKPTLADDEAGKFTVESFIQGPEWLPNADVQFESTL. 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11576 1130 FunFam Pectinesterase 620 780 - -
Seca4g11576 1130 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 624 780 IPR035513 -
Seca4g11576 1130 Gene3D - 258 560 IPR012334 -
Seca4g11576 1130 Gene3D - 815 1130 IPR012334 -
Seca4g11576 1130 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 213 IPR035513 -
Seca4g11576 1130 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 213 IPR035513 -
Seca4g11576 1130 FunFam Pectinesterase 49 213 - -
Seca4g11576 1130 SMART PMEI_2 619 775 IPR006501 GO:0004857
Seca4g11576 1130 SMART PMEI_2 48 208 IPR006501 GO:0004857
Seca4g11576 1130 CDD PMEI-like_3 55 213 - -
Seca4g11576 1130 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Seca4g11576 1130 FunFam Pectinesterase 258 564 - -
Seca4g11576 1130 Gene3D Invertase/pectin methylesterase inhibitor family protein 622 780 IPR035513 -
Seca4g11576 1130 SUPERFAMILY Pectin lyase-like 819 1127 IPR011050 -
Seca4g11576 1130 Pfam Pectinesterase 821 1115 IPR000070 GO:0030599|GO:0042545
Seca4g11576 1130 Pfam Pectinesterase 264 552 IPR000070 GO:0030599|GO:0042545
Seca4g11576 1130 Coils Coil 123 143 - -
Seca4g11576 1130 SUPERFAMILY Pectin lyase-like 259 556 IPR011050 -
Seca4g11576 1130 PANTHER PECTINESTERASE 588 1120 - -
Seca4g11576 1130 FunFam Pectinesterase 815 1130 - -
Seca4g11576 1130 Pfam Plant invertase/pectin methylesterase inhibitor 624 775 IPR006501 GO:0004857
Seca4g11576 1130 Pfam Plant invertase/pectin methylesterase inhibitor 52 208 IPR006501 GO:0004857
Seca4g11576 1130 NCBIfam pectinesterase inhibitor domain 41 212 IPR006501 GO:0004857
Seca4g11576 1130 NCBIfam pectinesterase inhibitor domain 607 777 IPR006501 GO:0004857
Seca4g11576 1130 Coils Coil 217 237 - -
Seca4g11576 1130 ProSitePatterns Pectinesterase signature 2. 965 974 IPR033131 -
Seca4g11576 1130 CDD PMEI-like_3 626 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11576 Seca-Chr4 255466988 255479238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11576 2 555 Carbohydrate Esterase AT3G14310 70.087 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11576 K01051 - pvu:PHAVU_010G123100g 1737.24