Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11566 ATGGGTGCTACTTCAGGGTCAAGTGACACATTGGGTGAGTCTGATACCGTTGAGATAACGGGAAAAATCATGGTGGTAGCTGTGATTTTCCTCTTCATGGTGGTTGTGTTTGTTCTCTTGCTCCATCTCTATGCTAAATGGTTCTGGTGGCGCATTGAGGAAAGCACTGCTCCTCAATCACGCAACCGCCGCAGGCGGCGGCGGTTTGTCTTTGCCCCTGGTCAAGACCCTGTCTTCTATGGCTCTCACCAAATTGGTCTTGACCCTGCAGTTCTTAAGTCCTTGCCAGTTTTGGTTTTCCAACCAGAGGACTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCTCTGAGATTGTTGAAGGGGAAAAGGCCAGGCTTTTACCTAAATGCAATCATGGGTTTCATGTAGAGTGCATAGATATGTGGTTCCAATCCCATTCTACCTGTCCTCTTTGTAGGAACGCTGTTGCCTCTGAAACCTCTAAACCAATTAATAGTACTTCAAATGCTGAAGAGAATGTGTTAGGGAATAGTGAGCCTTCAGAAGCAGAAAATTCAGGTGATGTGAGTGACTTGGAGTCTTCAAATTTTCCCACAAATGTGTTAGTTTGGGGGAACCAGACACAAGTGAGTTCTTTTGGTGCTTCCTTGGAAGAAGGCACTTCTCAGCAGCTACCTTGCTCCCCATCATCTTCTTCAGCCAGTGAAAGCACTAATAGTAGATGTCATGGAATGTTGGTGATTGATATACCAAGTGAATTCACTTCATCCTCTTTATCACCTTCTGCTGGTAGATGTGCTGAAGATGAGATGAAATCACCAATGACAGCAAGACTGAGGTCATTTAAGAGGCTTTTAAGCAGGGACAAAAAATTAAGTCCTTGTAGTCCCAGTTCTATGGATGTTGAACAAGCACAGAGCTAG 924 0.4459 MGATSGSSDTLGESDTVEITGKIMVVAVIFLFMVVVFVLLLHLYAKWFWWRIEESTAPQSRNRRRRRRFVFAPGQDPVFYGSHQIGLDPAVLKSLPVLVFQPEDFKDGLECAVCLSEIVEGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNAVASETSKPINSTSNAEENVLGNSEPSEAENSGDVSDLESSNFPTNVLVWGNQTQVSSFGASLEEGTSQQLPCSPSSSSASESTNSRCHGMLVIDIPSEFTSSSLSPSAGRCAEDEMKSPMTARLRSFKRLLSRDKKLSPCSPSSMDVEQAQS. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11566 307 CDD RING-H2_EL5-like 110 153 - -
Seca4g11566 307 Pfam Ring finger domain 110 153 IPR001841 -
Seca4g11566 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 162 IPR013083 -
Seca4g11566 307 MobiDBLite consensus disorder prediction 292 307 - -
Seca4g11566 307 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Seca4g11566 307 MobiDBLite consensus disorder prediction 288 307 - -
Seca4g11566 307 MobiDBLite consensus disorder prediction 160 193 - -
Seca4g11566 307 FunFam RING-H2 finger protein ATL3 80 158 - -
Seca4g11566 307 SUPERFAMILY RING/U-box 91 158 - -
Seca4g11566 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 182 - -
Seca4g11566 307 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11566 Seca-Chr4 255383527 255384450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11566 18 290 C3H Transcription Factor Family AT1G53820 47.119 4.52e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11566 - - gmx:100775523 409.453