Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11559 ATGGCACCTGAACACGAAGACGATCTCAAGGACGAGAAGAATCCCCGACCCCTTGACGAGGATGACATCGCCCTCCTCAAAACTTACGGTTTGGGACCTTATTCCACAAGCATAAAAAAAGCGGAGAAGGAAATCAAAGATATGGCAAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGACACTGGTTTAGCTGCCCCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATGCAAGAGGAGCAACCTCTTCAGGTGGCAAGATGCACCAAGATTATAAATCCAAACTCTGAAGAAGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAGGTGCCTTTGTTTTTTGTTGTTGGGTTAGGAGACAAAGTTTCACCCACTGATATAGAGGAAGGAATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGTTGTAAAGAGCAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTTTGTTATGGCCCGCCAGGAACTGGCAAAACACTTTTAGCCAGGGCTGTGGCTAATAGGACTGACGCTTGTTTTATTAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAAGGGGCTCGGATGGTTCGTGAACTATTTCAGATGGCTCGTTCAAAGAAGGCATGTATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGTACAATGCTTGAAATTGTGAATCAACTTGATGGATTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGTTGGTTGATTTGGCCATTATATGTTTTTTCCTTTCTTGTGGGAGAGCATCTCTAATTTCTAGGCCTGACACTCTAGATCCAGCACTACTCCGGCCTGGGCGATTGGATCGTAAAGTGGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGATATTCAAGATACATACAAGAACCATGAACTGTGAAAGGGATATCCGTTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCCACTGGAGCTGATATAAGGAGTGTATGCACTGAAGCTGGTATGTATGCTATCCGTGCCCGTAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTAAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTACAACTGA 1356 0.4255 MAPEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEEAKYVINVKQIAKVPLFFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRLVDLAIICFFLSCGRASLISRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11559 451 SMART AAA_5 205 365 IPR003593 GO:0016887
Seca4g11559 451 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g11559 451 Gene3D - 162 362 IPR027417 -
Seca4g11559 451 Gene3D - 364 445 - -
Seca4g11559 451 Pfam ATPase family associated with various cellular activities (AAA) 209 322 IPR003959 GO:0005524|GO:0016887
Seca4g11559 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 441 IPR027417 -
Seca4g11559 451 Gene3D - 33 161 IPR012340 -
Seca4g11559 451 FunFam 26S protease regulatory subunit 7 33 161 - -
Seca4g11559 451 CDD RecA-like_PAN_like 170 361 - -
Seca4g11559 451 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 437 - -
Seca4g11559 451 Pfam AAA+ lid domain 385 428 IPR041569 -
Seca4g11559 451 FunFam 26S protease regulatory subunit 7 364 435 - -
Seca4g11559 451 FunFam 26S protease regulatory subunit 7 162 362 - -
Seca4g11559 451 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11559 Seca-Chr4 255309741 255313994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11559 174 416 Calmodulin-binding Proteins AT3G56690 34.016 4.14e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11559 K03061 - gmx:100779787 833.172