Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11558 ATGGAGGTGGATCTATGGCTGATGCTGGTGCTGCTGTTCATCAGCACCTGCATTCTGGCCATTAACGGTGACACAGATCCAAATGACGTTGCTTCTCTAAAAGTTATGTTTCAAAGTATGAACTCACCAGCCCAGCTAAATTGGCCTGCAAATGGTGATAATCCTTGTGGACAGTCTTGGAAAGGCATCACTTGCTCAGGCAACCGAGTCACAGAGATTAAGTTACCTGGTCTTGGACTAACTGGAACTTTGGGTTACCAGCTACAAACCTTGACATCTGTGACAAACCTAGACCTGAGTAACAACAATATTGGGGGCTCCATACCATACGGACTTCCTCCAAATGTGCAGCACCTAAATCTTGCTAATAATATTTTGAATGGCTCCATACCTTATTCTCTTTCTGATATGACTTCACTTATAGACCTGAATCTTGGCCACAATCAACTCCAACAACCACTGAATGTTGACTTTCAGAAGCTTTCTTCCCTTTCTACATTCCAGGTGACTGTGTTACCTATTACTTGTTCCAGGGATCTCTCGTTCAATTCTTTAACAGGTGACCTCCCTCAGACTTTGAGCTCACTTTCAAGCATAACCACCATGTATCTGCAAAACAACCAGTTCACAGGCACCATCAATGTCCTCGCTGATCTGCCTCTTGAGATTCTGAATGTAGCAAACAATCATTTTACAGGCTGGGTACCAGAACAGTTAAAAACCATAAACCTGCAAAAGGATGGCAATGCATGGAGCTCAGGACCTGCACCCCCACCTCCTCCCGGGACACCTCCAATAACAAAAGGCAATCGAAGTCACAAGTCTGGTGGACATGGCACCTCATCTGATGCTGGCACAAGTGATGGTGGCAAAAAATCTGGTATCGGAGGTGGTGGCATTGCTGGAATAGTGATCTCCATCTTAGTTGTTGGGGCGATAGTAGCATTCTTTCTGGTGAAGAGAAGATCTAAGAAGTCATTTTCAGATGTGGAAAAGCTTGACAATCAGCCCTTGGCTCCTCTTACTTCAAATGAAGTCCATGAAATGAATTCCGTGCAAACTTCTTCTATAATTGATTTGAAGACATTTGATGCTTCCGAGGCCTCAATCAGTCTTAAACCCCCACCTTTTGATCGTCGTAAATCATTTGACGAGGATGAGTTTCCAAAGAAGCCTGCTATTGTCAAGAAGACTGTAGCATTTCCTGCAAATGTGAAATCATATTCTATAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTTTGGGTGAGGGGTCTTTTGGCCGTGTATACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAGTGATTTGTCTGATGATTTTGCAGAAGTAGTTTCAAACATCTCCCATTTGCATCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAACACCTCCTAGTCTATGAGTTTCATAAAAATGGATCACTGCATGATTTCCTTCACCTACCTGATGAGTATAGTAAACCACTGATATGGAATTCACGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTACATGAAGTTTGTTCACCATCAGTTGTTCACAAGAATATTAAGTCAGCCAACATATTGCTTGATGTTGATCTTAATCCTCATCTCTCAGACAGTGGATTGGCTAGCTATATTCCAAATGCAAACCAGGTATTGAACAACAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGCTTGTCTGGTCATTACACTCTTAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTAGCTAAAATGGTTGATCCTGTATTGGAAGGACTATACCCTGTCAAGTCTCTTTCTCGATTTGCTGATGTTATTGCTCTTTGTGTTCAGCCGGAACCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTTCGATTAGTGCAGCGAACTAACATGAGCAAGCGAACATTTGGAACTGATCAAGGAAAAACCCAACGAGGGGATGATGACCAAGATACACAAGACATGTAA 2178 0.4325 MEVDLWLMLVLLFISTCILAINGDTDPNDVASLKVMFQSMNSPAQLNWPANGDNPCGQSWKGITCSGNRVTEIKLPGLGLTGTLGYQLQTLTSVTNLDLSNNNIGGSIPYGLPPNVQHLNLANNILNGSIPYSLSDMTSLIDLNLGHNQLQQPLNVDFQKLSSLSTFQVTVLPITCSRDLSFNSLTGDLPQTLSSLSSITTMYLQNNQFTGTINVLADLPLEILNVANNHFTGWVPEQLKTINLQKDGNAWSSGPAPPPPPGTPPITKGNRSHKSGGHGTSSDAGTSDGGKKSGIGGGGIAGIVISILVVGAIVAFFLVKRRSKKSFSDVEKLDNQPLAPLTSNEVHEMNSVQTSSIIDLKTFDASEASISLKPPPFDRRKSFDEDEFPKKPAIVKKTVAFPANVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPSDLSDDFAEVVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDVDLNPHLSDSGLASYIPNANQVLNNNAGSGYEAPEVGLSGHYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPVLEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGKTQRGDDDQDTQDM. 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11558 725 Gene3D Phosphorylase Kinase; domain 1 386 497 - -
Seca4g11558 725 PANTHER LEUCINE RICH REPEAT KINASE 2 58 700 - -
Seca4g11558 725 Gene3D Transferase(Phosphotransferase) domain 1 499 719 - -
Seca4g11558 725 Pfam Protein tyrosine and serine/threonine kinase 422 692 IPR001245 GO:0004672|GO:0006468
Seca4g11558 725 Gene3D Ribonuclease Inhibitor 176 254 IPR032675 -
Seca4g11558 725 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 262 - -
Seca4g11558 725 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Seca4g11558 725 ProSiteProfiles Protein kinase domain profile. 420 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11558 725 SUPERFAMILY Protein kinase-like (PK-like) 402 692 IPR011009 -
Seca4g11558 725 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 384 497 - -
Seca4g11558 725 Gene3D Ribonuclease Inhibitor 26 175 IPR032675 -
Seca4g11558 725 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Seca4g11558 725 SUPERFAMILY L domain-like 26 239 - -
Seca4g11558 725 MobiDBLite consensus disorder prediction 710 725 - -
Seca4g11558 725 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 498 706 - -
Seca4g11558 725 MobiDBLite consensus disorder prediction 268 288 - -
Seca4g11558 725 MobiDBLite consensus disorder prediction 247 291 - -
Seca4g11558 725 MobiDBLite consensus disorder prediction 703 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11558 Seca-Chr4 255297800 255307226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11558 6 724 Strubbelig Receptor Gene Family AT1G53730 65.757 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca4g11558 PK_Tyr_Ser-Thr 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11558 - - gmx:100780323 1107.05