Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11557 ATGAAGAGCAACAACAACAACAACGTTGGACAATTTGGGGACACGACAATGACCAAGGTTTTTGTTGGGGGGTTAGCCTGGGAGACTCCTACGGATGCCCTCAGAGACCACTTTGAGAAATACGGCGAGATCCTTGAAGCTGTCATCATTTCCGATAAGCTCACTGCCAAATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCAGAGGCTGCGAAGAAGGCTTGCGAGGATTCAGAAGGTCACATTATCAATGGCCGTCGAGCAAACTGCAATCTGGCTTACATAGGAGCTCGTCGCCCAAGGTCTTCTTCCCCTGCTTCACCACCACCTCCACAACCACAAGAAGGATCAAACGGCGGAGGACCGAAGAACAACGCATCAAGGGCACCAGTCAATCACGTGCAGTGGTATTATCCGGTAGGGACACCTGCATCGCCGTTCCATCATCCCCACGCTCACGCCCTTCCTTTCTATGGGTATGCGCCCACCTACGTTGCGACGGATTACAGTTACAATTACAATCAGAAGCTGAGCTACGGCAGTGGTGGGGCCTACATGAATGGGCACCACCTGTCCCACGTGTACCCGAGGCAGGCTATTGTGGGTACGAACCCATTGATGCCAATATACCCTGTCTATCAGTGTTATCATCCAACGGAGACCATGGGCGTACCTGCTCAAATCTTTTATCCAACGGCAGCGAGGCATTTTGCGCCAGTGCCAGCAGCATCAGGCATCATGTGCAAACCCGCATCCATCACTCCTCACACAGGTGCATCACATGAAAACATGTCCAAACCAGTCAATGCCTAA 816 0.5172 MKSNNNNNVGQFGDTTMTKVFVGGLAWETPTDALRDHFEKYGEILEAVIISDKLTAKSKGYGFVTFKEAEAAKKACEDSEGHIINGRRANCNLAYIGARRPRSSSPASPPPPQPQEGSNGGGPKNNASRAPVNHVQWYYPVGTPASPFHHPHAHALPFYGYAPTYVATDYSYNYNQKLSYGSGGAYMNGHHLSHVYPRQAIVGTNPLMPIYPVYQCYHPTETMGVPAQIFYPTAARHFAPVPAASGIMCKPASITPHTGASHENMSKPVNA. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11557 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 88 IPR000504 GO:0003723
Seca4g11557 271 SUPERFAMILY RNA-binding domain, RBD 14 122 IPR035979 GO:0003676
Seca4g11557 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Seca4g11557 271 SMART rrm1_1 19 92 IPR000504 GO:0003723
Seca4g11557 271 Gene3D - 1 108 IPR012677 -
Seca4g11557 271 PANTHER BOULE-RELATED 7 231 - -
Seca4g11557 271 MobiDBLite consensus disorder prediction 99 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11557 Seca-Chr4 255285435 255289156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11557 14 165 C2H2 Transcription Factor Family AT2G19380 29.268 4.38e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11557 - - lang:109337745 355.91