Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11553 ATGGTATCTGTCATAATACCCTTACTTTTTTTGTCCTTGTTGGTTGTTCAAGTCTCTTCCTCTTGTAACCAGATTGATCAAGACTCCCTTTTGGCCTTCTCTGGGAACATATCCACTTCTTCCCCTTACCCTCCTCTCAATTGGTCTGCTTCTTCTGATTGTTGCTATTGGGAAGGCATTACCTGTGATGGGGATTCACGTGTCACTCATCTTTTGCTACCTTATAGAGGTCTCACTGGCTTCATCTCCCCATCTATCACAAGCCTCGCTGCTCTTTCTCACCTTAATCTCTCCCATAATCGGTTATCTGGTAATCTCCAGAACAAGTTTTTCTCACTGCTTAATCACCTGCTGGTTCTTGATTTAAGCTACAACCATCTCTCTGCTGATAACAGTAGCAGCACTGGTACTGGGGTTATCCAGGAGCTGGATTTGTCTAGTAATTCATTCAATCACTTGGCAGCTGCAGCAGGAGGAGGGAGTTTGGTATCTTTCAATGTTAGTAACAACAGCTTCACAGGTCAAATTCCAACTTCTCTCTTTTGCATTAATGACCATAACTCCTCCTCTATCAGATTCTTGGATTATTCCTCCAATAATTTTGATGGTCCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAGAGATTTCGAGCAGGTTTCAATTTTCTATCCGGGCCTATCCCAAGTGATATTTTTAATGTTGTTTCTCTCACAGAAATATCATTGCCCCTAAATAAACTCACTGGAACAATTGGGGATGGCATTGTTAGCCTTACCAATCTCACAGTTTTGGAGCTATACTCCAATCATTTCACGGGCCCCATTCCCCAGGATATTGGCAAACTTTCCAAATTGGAAAGGCTACTTCTTCATGTCAACAATTTGACAGGTACTCTGCCCCCATCCCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAACGTCTTGGAGGGAAATCTCTCATCCTTCAATTTCTCAGGACTCCAAAGACTTGCAACACTTGACCTTGGCAACAATAAATTTACTGGTGTCTTACCACCAACCCTTTATGCATGCAAATCACTTGCAGCAGTAAGGCTAGCATCTAATCAACTTGAGGGACAGATTTCCCCTGAGATACTTGGACTTAAGTCTCTTTCTTTCCTATCAATTTCTACTAACAATTTGAGGAATGTCACTGGGGCTCTGAGAATTCTCACGGGGCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTTCAATGAAAGGATACCAAATGATAAAAACATATTAGACCCAGATGGATTCCAAAACCTCCAGGTTCTAGGTTTGGGTGGTTGTAACTTCACAGGTATCATACCAGGCTGGCTTGCAAATCTGAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAAATTAGTGGTTCCATTCCTCCTTGGTTGGGTACACTTCCTCAGCTTTTCTACATGGATTTGTCCGTTAACCTGCTTACAGGTATATTTCCAACGAAGCTCACAGGACTCCCAGCACTAACATCACAACAGGCAAATGATAAAGTGGAAAGGGCTTACCTGGAGTTACCTGTCTTTGCTGCAGCCAACAATGTTTCCCTTTTGCAATATAATCAGCTTTCCAACCTACCACCAGCAATATATCTGGGAACCAATCGCCTTAGTGGCAGTATACCAATTGAGATTGGCCAACTGAAAGTCCTGCACACGCTGGACCTGAAGAAAAACAACTTCTCTGGCAATATACCTGTGCAAATTTCAAACTTGACCAACTTAGAGAAACTGGACCTCTCAGGAAACCAACTGTCTGGTGAAATTCCTGATTCACTCAGAAGATTACATTTCTTGTCTTATTTCAGTGTAGCATACAATAATCTTCAGGGACAGATACCAACTGGTGGTCAGTTTGATACTTTCTCCTCCTCCAGTTTTGAAGGAAACCCACAATTGTGTGGTTCAGTTATTCAGCGCTCCTGTCCTTCTCAACAGAGTACTGATAGTACTGCAGCTAGTAGCAGCTCAAACAGAAAAGTATTGATTGGGCTTATAACTGCATTCTGTTTTGGCTTTGCTGCCTTGGTGACAGTTTTGGCACTGTGGATACTCTCCAAGAGGAGGATCAATCCAGGAGGAGTTTCTGATAAGATTGAACTGGAGTCAATTTCTACCTGCTCCAACAATGGGGTTCATCCTGAGGTTGACAAGGAGACTAGCCTAGTGGTATTGTTCCCCAACAAAACTAATGAAACCAAGGATCTTACCATATTTGAGATCATAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACTTTACCAAATGGAACTACACTAGCCATCAAGAAACTTTCTGGAGATTTGGGCCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTCTGTCAACAGCACAACATGAGAACCTGGTGGCATTGCAAGGCTACTGTGTGCATGATGGTTTTCGGCTTCTCATATATAATTACATGGAGAATGGAAGTCTGGATTACTGGTTGCATGAAAAGGCTGATGGTTCATCTCATCTTGATTGGCCAACTCGTTTGAAGATTGCACAAGGAGCAAGTTGTGGTCTGGCTTATTTGCATCAGATATGTGAACCACACATTGTGCACCGTGATATAAAGTCAAGCAATATACTCCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGTCTGTCCCGATTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCTACCCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTACTCACTGGGAGGAGGCCTGTTGATGTATGCAAGCCAAAAATGTCAAGAGAGTTGGTTGGATGGGTTCAACAGATGAGAAGTGAAGGAAAACAAGATCAACTTTTTGACCCTATTCTAAGAGGGAAGGGCTATGAAGGAGAGATGCTGCAGGTACTGGATGTGGCCTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTAAGGAATGTAGGATCAGGCAACCAACACAGAAATAAAGACTAG 3162 0.4273 MVSVIIPLLFLSLLVVQVSSSCNQIDQDSLLAFSGNISTSSPYPPLNWSASSDCCYWEGITCDGDSRVTHLLLPYRGLTGFISPSITSLAALSHLNLSHNRLSGNLQNKFFSLLNHLLVLDLSYNHLSADNSSSTGTGVIQELDLSSNSFNHLAAAAGGGSLVSFNVSNNSFTGQIPTSLFCINDHNSSSIRFLDYSSNNFDGPIQPGLGACSKLERFRAGFNFLSGPIPSDIFNVVSLTEISLPLNKLTGTIGDGIVSLTNLTVLELYSNHFTGPIPQDIGKLSKLERLLLHVNNLTGTLPPSLMNCVNLVVLNLRVNVLEGNLSSFNFSGLQRLATLDLGNNKFTGVLPPTLYACKSLAAVRLASNQLEGQISPEILGLKSLSFLSISTNNLRNVTGALRILTGLKKLSTLMLSKNFFNERIPNDKNILDPDGFQNLQVLGLGGCNFTGIIPGWLANLKKLEALDLSFNQISGSIPPWLGTLPQLFYMDLSVNLLTGIFPTKLTGLPALTSQQANDKVERAYLELPVFAAANNVSLLQYNQLSNLPPAIYLGTNRLSGSIPIEIGQLKVLHTLDLKKNNFSGNIPVQISNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSYFSVAYNNLQGQIPTGGQFDTFSSSSFEGNPQLCGSVIQRSCPSQQSTDSTAASSSSNRKVLIGLITAFCFGFAALVTVLALWILSKRRINPGGVSDKIELESISTCSNNGVHPEVDKETSLVVLFPNKTNETKDLTIFEIIKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLIYNYMENGSLDYWLHEKADGSSHLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSRELVGWVQQMRSEGKQDQLFDPILRGKGYEGEMLQVLDVACMCVSHNPFKRPSIREVVEWLRNVGSGNQHRNKD. 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11553 1053 Pfam Protein tyrosine and serine/threonine kinase 772 1038 IPR001245 GO:0004672|GO:0006468
Seca4g11553 1053 SUPERFAMILY L domain-like 21 244 - -
Seca4g11553 1053 SUPERFAMILY Protein kinase-like (PK-like) 754 1040 IPR011009 -
Seca4g11553 1053 Gene3D Phosphorylase Kinase; domain 1 732 844 - -
Seca4g11553 1053 SMART LRR_typ_2 114 138 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 260 283 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 333 357 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 381 403 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 284 308 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 436 459 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 460 484 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 407 433 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 593 617 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 141 160 IPR003591 -
Seca4g11553 1053 SMART LRR_typ_2 89 113 IPR003591 -
Seca4g11553 1053 FunFam Leucine-rich repeat receptor protein kinase MSP1 735 844 - -
Seca4g11553 1053 Gene3D Ribonuclease Inhibitor 23 306 IPR032675 -
Seca4g11553 1053 SMART serkin_6 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11553 1053 Gene3D Ribonuclease Inhibitor 328 672 IPR032675 -
Seca4g11553 1053 PRINTS Leucine-rich repeat signature 463 476 - -
Seca4g11553 1053 PRINTS Leucine-rich repeat signature 593 606 - -
Seca4g11553 1053 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 334 1040 - -
Seca4g11553 1053 ProSiteProfiles Protein kinase domain profile. 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11553 1053 FunFam Leucine-rich repeat receptor-like protein kinase 845 1051 - -
Seca4g11553 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Seca4g11553 1053 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
Seca4g11553 1053 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 230 325 - -
Seca4g11553 1053 Pfam Leucine Rich Repeat 595 616 IPR001611 GO:0005515
Seca4g11553 1053 Gene3D Transferase(Phosphotransferase) domain 1 845 1053 - -
Seca4g11553 1053 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Seca4g11553 1053 SUPERFAMILY RNI-like 166 631 - -
Seca4g11553 1053 FunFam Tyrosine-sulfated glycopeptide receptor 1 330 668 - -
Seca4g11553 1053 ProSiteProfiles Leucine-rich repeat profile. 462 485 IPR001611 GO:0005515
Seca4g11553 1053 ProSiteProfiles Leucine-rich repeat profile. 595 617 IPR001611 GO:0005515
Seca4g11553 1053 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11553 Seca-Chr4 255219965 255223174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11553 5 702 Miscellaneous Gene Families AT1G17240 51.401 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca4g11553 PK_Tyr_Ser-Thr 4.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11553 - - gmx:100807989 1703.72