Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11552 ATGAGATCAACCCCATCAAGACCCTCTTCTTCCTCTGCATATTCATCCACTTGTAAATACAATTACATGGTTTCCAAGTTGATGGTCTCTGTCATAATACCCTTACTTTTTTTGTCCTTGTTGGTTGTTCAAGTCTCTTCCTCTTGTAACCAGATTGACAAAGACTCCCTCTTGGCCTTCTCTCGGAACATATCCACTTATCCTCCTCTCAATTGGTCTTCTTCTTCTGATTGTTGCCATTGGGAAGGCATTACTTGTGATGTGGATTCACGCGTCACTCATCTTTTGTTACCTTGTAGAGGCCTCACTGGCTTCATCTCCCTCTCTCTCACAAGCCTCTATGCTCTTTCTCACCTTAATCTCTCCCATAATAGGTTTACTGGCAATCTCCAAAACCAGTTTTTCTCACTGCTTAATCACCTTTTTGTTCTTGATTTAAGCTACAACCATCTCTCTGGTGAATTGCCACCTTTTGTGGTTGATAACCGTAGCAGCACTAGCACTGGTGTTATCCAAGAATTTGATCTGTCTAGTAATTCATTCAATGGAAAACTCCCATCTTCTCTAATTCAGCACCTAGCAGGAGGAGGGAGTTTGGTATCTTTCAATGTTAGTAACAACAGCTTCACAGGTCAAATTCCAACTTCTCTCTTTTGCATCAATGACCATAACTCCTCCTCTATCAGATTCTTGGATTATTCCTCCAATGATTTTGATGGTCCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAGAGATTTCTAGCAGGTTTCAATCTTCTATCTGGGCCTATCCCAAGTGATATTTTTTATGCTGTTTCTCTCACAGAAATATCATTGCCCCTAAATAAACTCACTGGAACAATTGGTGATGGCATTGTTAGCCTTACCAATCTCACAGTTTTGGAGCTATACTCCAATCATTTCACTGGCCCCATTCCCCAGGATATTGGCAAACTTTCCAAATTGGAAAGGCTACTTCTTCATGTTAACAATTTGACAGGTACTCTGCCCCCATCCCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAACATCTTGGAGGGAAATCTCTCAGCCTTCAATTTCTCAGGACTCCAAAGACTTGAAACACTTGACCTTGGAAACAACAAATTTACTGGTGTTTTACCACCAACCCTTTATGCATGCAAATCACTTGCAGCAGTAAGGCTAGCATCTAATCAACTTGAGGGACAGATTTCCCCTGAGATACTTGGACTTAAGTCTCTTTCTTTCCTATCAGTTTCTACTAACAATTTGACGAATGTCACTGGGGCTCTGAGAATTCTCACGGGGCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTTCAATGAAAGGATACCAAATGATACGAACATATTAGACCCAGATGGATTCCAAAACCTCCAGGTTCTAGGCATTGGTGGTTGTAACTTCACAGGTCAAATACCAGGCTGGCTTGCAAATCTGAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAAATTAATGGTTCCATTCCTCCTTGGTTGGGTACACTTCCTCAGCTTTTCTACATGGATTTGTCTGTTAACTTCCTTACAGGTATATTTCCAACGGAGCTCACAAGACTCCCAGCACTAACATCACAACAGGCAAATGATAAAGTGGAAAGGGCTTACTTGGAGTTACCAGTCTTTGCTGCAGCCAAAAATGTTTCCCTTTTGCAATATAATCAGCTTTCCAACCTACCGCCAGCAATGCATCTGGGAACCAATCGCCTTAGTGGCAGTATACCAATTGAGATTGGCCAACTGAAAGTCCTTCACACGTTGGACCTGAAGAAAAACAACTTCTCTGGCAATATACCAGTGCAAATTTCAAACTTGACCAACTTAGAGAAACTGGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTCATTCACTCAGAAGATTACACTTCTTGTCTTATTTCAGTGTGGCATACAATAATCTTCAAGGACAGATACCAACAGGTGGTCAATTTGATACTTTCTCCTCCTCCAGCTATGAAGGAAACCCACAATTGTGTGGTTCAGTTATTCAGAGCTCTTGTTTTTCTCAACAAAATAATAATAGTAATAGTGCTTCAGCTAGTGGTAGCTCAAACAAAAAAGTGCTGATCAGACTTATCACTGGAGTTGGTTTTGGCACTGCTTTCTTGATAGTAGTGTTGACACTGTGGATACTGTCTAAGTGGAAGGTCAATCCAAGAGGAGTTCCTAACAAGATTGATCTGAAATCAATTTCCACCAACACCAACAATGGGGTTCATCCTGAGGTTGACAAGGGGACTAGCCTAGTGGTATTGTTCCCTAACAAAACTAATGAAACCAAGGATCTTACCCTTACCATATTTGATATCATAAAAGCCACTGAAAATTTCAGTCAGGCAAACATGATAGGATGTGGGGATTTTGGTTTGGTTTACAAAGCAACACTACCAAATGGAGCAACTCTAGCCATCAAGAAACTTTTAGGAGATTTGAGCCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTATCAACAGCACAACATGAGAATCTGGTGGCATTACAAGGCTATTGTGTGCATGACGGTTTTCGGCTTCTCATATATTCTTATATGGAAAATGGAAGTTTGGATTACTGGCTGCATGAAAAGGCTCAACTTGATTGGCCAACTCGTTTGAAGACTGCACAAGGAGCAAGTTGTGGTTTGGCTTATTTGCATCATATATGTGAGCTACACATTGTGCATCGTGATATGAAGTCAAGCAACATACTCCTTGATGAAAATTTTGAGGCACATGTTGCTGATTTTGGGTTGTCTCGATTGATTCTTCCCAATCATACTAATGTTACAACTGAACTTGTAGGTACCTTGGGTTACATACCCCCAGAGTATGGACAAGAAAGGGTGGCTACTCCAAGGGGTGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGTTGCTCACTGGGAGAAGGCCTGTTGATGTTGGCAGGCCAAACATGTCAAGAGAGTTGGTTGGTTGGGTTCATCAGATGATAAATGAAGGAAAACATGATCAAGTTTTTGACCCTCTTCTGAGAGGGAAGGGCTTTGAAGGAGAGATGCTGCAGGTATTGGATGTGGCATGCATGTGTGTTAGCCAGAATCCTTTAAAGAGACCAAGCATTAGAGAAGTTGTTGAACGACTAAGGAATGCAAGATCAGCCAACCAATCCAGAAATGAAGACTAG 3273 0.4161 MRSTPSRPSSSSAYSSTCKYNYMVSKLMVSVIIPLLFLSLLVVQVSSSCNQIDKDSLLAFSRNISTYPPLNWSSSSDCCHWEGITCDVDSRVTHLLLPCRGLTGFISLSLTSLYALSHLNLSHNRFTGNLQNQFFSLLNHLFVLDLSYNHLSGELPPFVVDNRSSTSTGVIQEFDLSSNSFNGKLPSSLIQHLAGGGSLVSFNVSNNSFTGQIPTSLFCINDHNSSSIRFLDYSSNDFDGPIQPGLGACSKLERFLAGFNLLSGPIPSDIFYAVSLTEISLPLNKLTGTIGDGIVSLTNLTVLELYSNHFTGPIPQDIGKLSKLERLLLHVNNLTGTLPPSLMNCVNLVVLNLRVNILEGNLSAFNFSGLQRLETLDLGNNKFTGVLPPTLYACKSLAAVRLASNQLEGQISPEILGLKSLSFLSVSTNNLTNVTGALRILTGLKKLSTLMLSKNFFNERIPNDTNILDPDGFQNLQVLGIGGCNFTGQIPGWLANLKKLEALDLSFNQINGSIPPWLGTLPQLFYMDLSVNFLTGIFPTELTRLPALTSQQANDKVERAYLELPVFAAAKNVSLLQYNQLSNLPPAMHLGTNRLSGSIPIEIGQLKVLHTLDLKKNNFSGNIPVQISNLTNLEKLDLSGNQLSGEIPHSLRRLHFLSYFSVAYNNLQGQIPTGGQFDTFSSSSYEGNPQLCGSVIQSSCFSQQNNNSNSASASGSSNKKVLIRLITGVGFGTAFLIVVLTLWILSKWKVNPRGVPNKIDLKSISTNTNNGVHPEVDKGTSLVVLFPNKTNETKDLTLTIFDIIKATENFSQANMIGCGDFGLVYKATLPNGATLAIKKLLGDLSLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLIYSYMENGSLDYWLHEKAQLDWPTRLKTAQGASCGLAYLHHICELHIVHRDMKSSNILLDENFEAHVADFGLSRLILPNHTNVTTELVGTLGYIPPEYGQERVATPRGDVYSFGVVMLELLTGRRPVDVGRPNMSRELVGWVHQMINEGKHDQVFDPLLRGKGFEGEMLQVLDVACMCVSQNPLKRPSIREVVERLRNARSANQSRNED. 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11552 1090 Gene3D Transferase(Phosphotransferase) domain 1 886 1090 - -
Seca4g11552 1090 SUPERFAMILY L domain-like 65 287 - -
Seca4g11552 1090 Gene3D Ribonuclease Inhibitor 197 271 IPR032675 -
Seca4g11552 1090 SUPERFAMILY L domain-like 473 700 - -
Seca4g11552 1090 CDD STKc_IRAK 816 1077 - -
Seca4g11552 1090 Gene3D Ribonuclease Inhibitor 272 364 IPR032675 -
Seca4g11552 1090 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Seca4g11552 1090 SMART serkin_6 810 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11552 1090 PRINTS Leucine-rich repeat signature 630 643 - -
Seca4g11552 1090 PRINTS Leucine-rich repeat signature 500 513 - -
Seca4g11552 1090 ProSiteProfiles Leucine-rich repeat profile. 632 655 IPR001611 GO:0005515
Seca4g11552 1090 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 370 1078 - -
Seca4g11552 1090 SMART LRR_typ_2 138 162 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 497 521 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 444 468 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 630 654 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 113 137 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 321 345 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 418 440 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 297 320 IPR003591 -
Seca4g11552 1090 SMART LRR_typ_2 370 394 IPR003591 -
Seca4g11552 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 267 362 - -
Seca4g11552 1090 FunFam Leucine-rich repeat receptor-like protein kinase 886 1088 - -
Seca4g11552 1090 Pfam Protein kinase domain 811 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11552 1090 Pfam Leucine Rich Repeat 632 653 IPR001611 GO:0005515
Seca4g11552 1090 Pfam Leucine Rich Repeat 372 391 IPR001611 GO:0005515
Seca4g11552 1090 Gene3D Ribonuclease Inhibitor 365 709 IPR032675 -
Seca4g11552 1090 SUPERFAMILY L domain-like 219 550 - -
Seca4g11552 1090 Gene3D Ribonuclease Inhibitor 50 192 IPR032675 -
Seca4g11552 1090 SUPERFAMILY Protein kinase-like (PK-like) 796 1077 IPR011009 -
Seca4g11552 1090 ProSiteProfiles Protein kinase domain profile. 810 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11552 1090 Pfam Leucine rich repeat 475 532 IPR001611 GO:0005515
Seca4g11552 1090 Pfam Leucine rich repeat N-terminal domain 53 87 IPR013210 -
Seca4g11552 1090 Gene3D Phosphorylase Kinase; domain 1 778 885 - -
Seca4g11552 1090 FunFam Tyrosine-sulfated glycopeptide receptor 1 367 705 - -
Seca4g11552 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 928 940 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11552 Seca-Chr4 255197700 255200972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11552 15 743 Miscellaneous Gene Families AT1G17250 51.223 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca4g11552 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11552 - - gmx:100781943 1627.84