Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11546 ATGATCAACTTCGAATGCAAAACAAAAAAACCAATGGATAGCACATTTCCCATACTAAAATTCATGCCTGTAGGATTCAGATTTCGTCCCACAGATGAAGAGCTTGTGGAGCACTACCTCAAGCACAAGTTGCAGGGTGATGATTTCCCTGTTCATATCATCCCTGAGCTTGATCTTTGCAAGTATGAGCCTTGGGAAATACCAGCTTGCTCGGTGATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAAGAGTAAAAGGTTTAACAGGGCAACTAAGTGTGGCTTCTGGAAAGCCACTGGGAATGACCGTAACATCAAGACCAGAGGCACCAACAATGTCATTGGAACCAAGAAGACTCTTGTTTTCTATGAAGGCCGTGTTCCTTCTGGTGTCAAAACCAGTTGGGTTATTCATGAGTATCATGCTGTTACCTTTGATGATAGCCAGAGGACCTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTAATGCAATGATATGTGATGAAGGGGAGCCCAGTAGACACATAGCTTCCGATTATGAAAATGAAGCAACAACAGAAGGAATTCCAGATGTAGGTGGTACTTTGCCAGAAGTGAATATGGAATCAATCTTTCAGCAACTGCAACAGGCAGAGAATTACTTCCCCTCAAACCAACAGTCTCCAGTTGGAATTGAGCAGGAAGCATCTTTCCCAAACTCCCCACTTCTCAATGCCTATTTTAGAAATGAAAACAACAGTATGCAGACTCCATTGGAGACTACAGAAGAGGAAGATGAGTTCGTGAATTCAATTTTAGTTGATGGGAATTTTTTTATCAGAGAAGAAAGAAGAAATGCTTTTGTCAATAGTTCCACTCAGTCAGAGTCATTGAGAAGGGTATACCATGAAAGCAGTGACACAGATGCTGAAGTAGCCTCTGCACTGGTAAAGATATATGGTCCAAAGTCCAAATGA 1005 0.4169 MINFECKTKKPMDSTFPILKFMPVGFRFRPTDEELVEHYLKHKLQGDDFPVHIIPELDLCKYEPWEIPACSVIKSDDPEWFFFSPRDYKYAKSKRFNRATKCGFWKATGNDRNIKTRGTNNVIGTKKTLVFYEGRVPSGVKTSWVIHEYHAVTFDDSQRTFVLCRLMKKAEKKAEGGTNAMICDEGEPSRHIASDYENEATTEGIPDVGGTLPEVNMESIFQQLQQAENYFPSNQQSPVGIEQEASFPNSPLLNAYFRNENNSMQTPLETTEEEDEFVNSILVDGNFFIREERRNAFVNSSTQSESLRRVYHESSDTDAEVASALVKIYGPKSK. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11546 334 Pfam No apical meristem (NAM) protein 23 150 IPR003441 GO:0003677|GO:0006355
Seca4g11546 334 SUPERFAMILY NAC domain 19 169 IPR036093 GO:0003677|GO:0006355
Seca4g11546 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 254 - -
Seca4g11546 334 ProSiteProfiles NAC domain profile. 22 169 IPR003441 GO:0003677|GO:0006355
Seca4g11546 334 Gene3D NAC domain 31 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11546 Seca-Chr4 255141940 255143652 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11546 19 176 NAC Transcription Factor Family AT4G35580 54.601 6.48e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g11546 NAM 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11546 - - aprc:113849171 441.425