Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11542 ATGGGGAACCCAGCATCCATGGTGGAAACAGTGCCTGTAGGTTACAGATTTCATCCAACTGATGAAGAGCTTGTGGGTCACTACTTGAAGCACAGGTTGCTTGGTGATGATTCCGGAGTGCACAATATCATAGCTGAGGTTGATGTTTGCAAGTTTGAACCTTGGGACTTACCAGCATTTTCCAAGGTAAAATCGGATGACCCAGAATGGTTTTTCTTTAGTCCTCTTGATTTGAAATGCACAAAAAGCATGAGGTGTAACAGGAAAACCAAGACTGGGTACTGGAAGATCACTGGTAAAGACCGTAACATCAAGACCAGAGTCACCAATAAGGTTATTGGCACAAAAAAGACTCTGGTTTTCTACAAGAGTTGTGGTCGTCGCCGTGACAAGACCAATTGGGTCATTCATGAATATCATGCAGTTACCTTTCCTAATGACAAGGTATGTGTACAGAGAGATTTTGTCTTGTGTCGCTTAATTAAGAAACCAGAGAAAACAGCAGAAGGGGGTGCTGATGAATTAATACATGATGAAGGGGAGCCAAGTAGCCATGTTGCTTCTGACTATGAAAGCAAGGCAACAGCAGATAGGGATCCAGATGTATGTGCTTCATCAGAAGTGAATTTGGAATCATTCTTTCCAGCACCACCTCTAGCAGAGGAATATGACTTCCTCTTACCACAGCAGTCTCCAGTTGTCACTGAAGAGGCGCCAAATTTCCAAGATTACTCATTTCTGGATTCCTTTTTCTGGGGATGA 762 0.4318 MGNPASMVETVPVGYRFHPTDEELVGHYLKHRLLGDDSGVHNIIAEVDVCKFEPWDLPAFSKVKSDDPEWFFFSPLDLKCTKSMRCNRKTKTGYWKITGKDRNIKTRVTNKVIGTKKTLVFYKSCGRRRDKTNWVIHEYHAVTFPNDKVCVQRDFVLCRLIKKPEKTAEGGADELIHDEGEPSSHVASDYESKATADRDPDVCASSEVNLESFFPAPPLAEEYDFLLPQQSPVVTEEAPNFQDYSFLDSFFWG. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11542 253 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Seca4g11542 253 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 185 - -
Seca4g11542 253 SUPERFAMILY NAC domain 6 163 IPR036093 GO:0003677|GO:0006355
Seca4g11542 253 MobiDBLite consensus disorder prediction 170 191 - -
Seca4g11542 253 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Seca4g11542 253 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11542 Seca-Chr4 255106900 255110056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11542 5 170 NAC Transcription Factor Family AT4G35580 50.898 6.08e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g11542 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11542 - - ccaj:109803958 317.005