Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11540 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAAGAGGAAGAGGAAGAGGAAGGAGCTGAAGAAATCATCACAAGAGAAGAAAGCAGCAGGTTAGGGTTATTACACCAGCACCAAGATGCAGCACCTTCCAATTTCATCAATCAAACAAAACAGCTAGACTTCATGGAATTGTCACTGGGGAACAATAAGGATGCTAGTGATGAAGCCAATTTCCAACAAGGCCATGCAACTGCTAGTTCTTCTGCCAACAACAGTAACCAACAGCCTCAGCCTACTGAGAAAGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTGGGGAAGCTCAACCGCTTGGTGATACCAAAACAACATGCTGAGAAGTATTTCCCCCTTGATTCCACAGCCAATGAGAAAGGCCTTCTTCTCAATTTTGAAGACAGGAATGGGAAGTTGTGGAGGTTCAGATACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGAGAGGTGTTGGGGAATTGTACAGGCATAGGTTGTACATAGATTGGAGGAGAAGGTCTAATCATGGCCCTGATCCCTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTGTCACAGTACTCCATCAGGTGGGGTGCCACTGGCAGATTGTACTCCCTTCCTTCCCCACAACCACCAAGGCAGCAGCAGCAGCAGCATGACCCTTTGCATCACCTCAATTACAACAACAACAACAACCATATGTATCCTTTTCATCACCATGGTGGTGGGAGTCACCACCACTACAATTATCATGATCTCAATTCAGGATCTGGGTCAGTCTATTACCTGAGGTCAGCACCATCAATGCCAATGGCTGATCAAAGGCAACAACAACAACAAGAAGGAGGAAATAGTAATATTTCCCCAATGATCATTGATTCTGTTCCAGTTGCTCATCATCATCATCATCACCAATATCACCATGGTGGTAAGAGTGGTTCTAGTAGTGGGAGTAGTACTACAAAACGGCTAAGACTATTTGGGGTGAACATGGAATGTGCTTCTTCACAGCCTGAAGACCCCAAATGTTGTAACTTGTTGTCCTCAACTTCAGTAGCACACACAATTTCACCATCAGGAAGGTTTGGGGATCAGAGAGGAGAAGCTTCAATGCTTTTTGATTTAGACCCCTCTTTGCAATACCGGCAGTGA 1269 0.45 MELMQEVKGYSDSREEEEEEEGAEEIITREESSRLGLLHQHQDAAPSNFINQTKQLDFMELSLGNNKDASDEANFQQGHATASSSANNSNQQPQPTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRSNHGPDPSTTLFTPFFLPNQPHLSQYSIRWGATGRLYSLPSPQPPRQQQQQHDPLHHLNYNNNNNHMYPFHHHGGGSHHHYNYHDLNSGSGSVYYLRSAPSMPMADQRQQQQQEGGNSNISPMIIDSVPVAHHHHHHQYHHGGKSGSSSGSSTTKRLRLFGVNMECASSQPEDPKCCNLLSSTSVAHTISPSGRFGDQRGEASMLFDLDPSLQYRQ. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11540 422 MobiDBLite consensus disorder prediction 245 268 - -
Seca4g11540 422 FunFam B3 domain-containing protein 95 215 - -
Seca4g11540 422 SMART B3_2 102 207 IPR003340 GO:0003677
Seca4g11540 422 MobiDBLite consensus disorder prediction 67 96 - -
Seca4g11540 422 Pfam B3 DNA binding domain 102 206 IPR003340 GO:0003677
Seca4g11540 422 MobiDBLite consensus disorder prediction 246 268 - -
Seca4g11540 422 Gene3D - 96 212 IPR015300 -
Seca4g11540 422 SUPERFAMILY DNA-binding pseudobarrel domain 98 190 IPR015300 -
Seca4g11540 422 CDD B3_DNA 100 189 IPR003340 GO:0003677
Seca4g11540 422 ProSiteProfiles B3 DNA-binding domain profile. 102 207 IPR003340 GO:0003677
Seca4g11540 422 MobiDBLite consensus disorder prediction 67 100 - -
Seca4g11540 422 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 378 IPR044800 GO:0003700
Seca4g11540 422 MobiDBLite consensus disorder prediction 338 359 - -
Seca4g11540 422 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11540 Seca-Chr4 255086564 255088884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11540 94 375 RAV Transcription Factor Family AT2G46870 49.823 3.03e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g11540 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11540 K09287 - gmx:100778733 476.478