Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11538 ATGTTTCCTCTTGTTACTACTATTAGTTTTGGACTTCTTTTGTTCTTGTTGCCTTTTATTACTTGTTCCCTCCAAGTGCAAAGAAAATTAGTGGAACCTCCTTTGTTTCAAAATTCTTGCAATGAAACATGTGGGAAACTACATGTTCCTTTTCCATTCTATGTTAATACTTCTTGTGTGTCAATGTCTAGTGCTTTCCACCTCTCTTGCTCAAATTCCTCTGCCCTTTTGCTCAAAATTGGCTTAGAAAACTACCCAGTTTTGGAATTCTTCTCAGATGGTTTGTTAGTGGACTTTCCAGGAACATCATCCTGTCGCCAGTACAATGACTTGAATTCATTTGGTAAAGGTTTTGCAGGAAAGGGCTATTTTGGGGTCTCAGTTGACAATGTTATTGGCCTCTATGACTGTGAGGATTCTTCCCTGTGTAAAGCAGATTGTGAAACAATTAACCTTCCTGGTTGTGATGGAAGTGGTGGTGGCTCCCTTGGTTGCTGCTATCCACTCTCTGACCATAGCATATGGCATGTTGGTGAAGGCTTTTCAGTGTTTTCTCAGTTTGGATGCAGGGGGTTTTCTAGTTGGGCTGTTTTGAGAGGGTCATATTCAGGAAAACGTGGGGTCAAATTGGAATGGGCTATTCCTAGGAACTCCTCCAAGGAAGCTTGTGCAAAGAATGCAGACATGGCTAATGCTACAGCAATTGAAGGTGGAGTGAGGTGTGTTTGTCAAGATGGATATGTTGGTGATGGGTTTGCTAATGGAACAGGATGCTTGCAGTCCTGTATCAAGGATGGACAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGGAAAATGGTTATCATTGCCGGAATCCTTGGTCCAGTTCTTATTGTCGCCTCCTTGGTTGCACTATTTTACCTTCTTAAAAGAAAAGAAAAGCCAGGAATGTTTGATGCTGAGCAGGCTTATTATCACAACATTTCATTTCGCAAAGCTTGTAGAACTAGACTATTTAGCCACCGTGAGCTAGAGGAAGCCACCAATGGTTTTGAAGAGGATCAGAAACTTATGCATGGAAGTAATGGGACAATGTTTGCTGGAGTTCTTGGTGATGGATCTCACATAGCTGTCCACAAGTTAAAATGTGAGAATGAGAAAGACATAATTCAAGTCTTGTCACAAATTGAGGTTCTATCTGCTGTTGTACATAGGAATATTGCTTCCCTTCTTGGATGCTGTATTGACTCTGGCCACACTCCTCTAATTGTCTATGAGTATCCTGCAAATGGTACCTTAGAGGAGCATTTAAGCCAAAGAAAAGGACAGAATTTACACTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTACTATTGCACTATTACATTATGAAATCTCTCCTCCCATATTTCACCATAACCTTAAGTCTAGCTGCATTTTCCTAGATGATGATTTTTCTGTCAAGATTGCAGGATTTGGACTGCTTAATTCTGATTTTACTACTTATGATTCTCACTTGTACAAGAACCATGAATGCTTGCGCCTGTTCAAAAATGATGTCTATGACATGGGAGTGGTGCTTATTGATATTATCTCAGGCTCAAATCAATTGGACTCACCAACTTCAGCCTTGCAGAAAATAAGGGCTGGAAAGCTAGAAGAAATTGTTGATCCACTTCTTTACTATCATGAACAACCACATCATCGCCAAGAGCAAATACAAATAATTGCAGACCTTGCAACAAGATGCTTGCTATTTGGTGCTGATGGAAAGCTAGGAATGATTGATGTTGCAAGGGAGTTGGTACATATAACTAAAGAGAGTCCTGATGGAGGAACTATGAGAGGACCTGCATTGGAAGAGACATTCTCAAATTCAAGCCTTCTTCAAATGATATCAATGTCTCCTGATTCTATGAATGTTCCTTGA 1932 0.4032 MFPLVTTISFGLLLFLLPFITCSLQVQRKLVEPPLFQNSCNETCGKLHVPFPFYVNTSCVSMSSAFHLSCSNSSALLLKIGLENYPVLEFFSDGLLVDFPGTSSCRQYNDLNSFGKGFAGKGYFGVSVDNVIGLYDCEDSSLCKADCETINLPGCDGSGGGSLGCCYPLSDHSIWHVGEGFSVFSQFGCRGFSSWAVLRGSYSGKRGVKLEWAIPRNSSKEACAKNADMANATAIEGGVRCVCQDGYVGDGFANGTGCLQSCIKDGQEAYGSDCYIKRHDQRKMVIIAGILGPVLIVASLVALFYLLKRKEKPGMFDAEQAYYHNISFRKACRTRLFSHRELEEATNGFEEDQKLMHGSNGTMFAGVLGDGSHIAVHKLKCENEKDIIQVLSQIEVLSAVVHRNIASLLGCCIDSGHTPLIVYEYPANGTLEEHLSQRKGQNLHWYRRLTIAAETASTIALLHYEISPPIFHHNLKSSCIFLDDDFSVKIAGFGLLNSDFTTYDSHLYKNHECLRLFKNDVYDMGVVLIDIISGSNQLDSPTSALQKIRAGKLEEIVDPLLYYHEQPHHRQEQIQIIADLATRCLLFGADGKLGMIDVARELVHITKESPDGGTMRGPALEETFSNSSLLQMISMSPDSMNVP. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11538 643 FunFam Putative WAK-related receptor-like protein kinase family protein 427 615 - -
Seca4g11538 643 Pfam Protein tyrosine and serine/threonine kinase 352 499 IPR001245 GO:0004672|GO:0006468
Seca4g11538 643 Gene3D Transferase(Phosphotransferase) domain 1 427 614 - -
Seca4g11538 643 Gene3D Phosphorylase Kinase; domain 1 320 425 - -
Seca4g11538 643 SUPERFAMILY Protein kinase-like (PK-like) 332 602 IPR011009 -
Seca4g11538 643 ProSiteProfiles Protein kinase domain profile. 349 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11538 643 FunFam probably inactive receptor-like protein kinase At2g46850 321 425 - -
Seca4g11538 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 37 606 IPR045274 GO:0007166
Seca4g11538 643 Pfam Wall-associated receptor kinase galacturonan-binding 40 90 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11538 Seca-Chr4 255046595 255050143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11538 5 605 Receptor kinase-like Gene Family AT2G23450 30.530 9.50e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca4g11538 PK_Tyr_Ser-Thr 3.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11538 - - gmx:100810557 992.26