Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11537 ATGGATTTAGGAGCCCCCACTATGACCCGGTTGGTCGGGGATTACATACTGGGTCCTCGAATCGGGTCGGGTTCATTCGCGGTGGTGTGGCGTTCGCGGCATCGACACTCAGGTTTGGAATTTGCGGTGAAAGAGATTGACAAGACGCAGTTGAGTCCCAAAGTGAGAGAGAATCTGATCAAAGAGATTTCTATCCTCAGCACCATCGATCACCCTAACATCGTTCGTCTCTTCGAAGCAATCCAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGGTGGTGGGGACCTCGCTGGTTACATCAATCGCCATGGCAGAGTTTCAGAACCCATTGCTCGCCATTTCATGAGGCAATTGGCTGCTGGGTTGCAGGTGCTTCAAGAAAAGAACCTCATACATAGAGATTTAAAACCACAGAACTTACTGTTGGCAACTACTGCAGCTATGCCAATTATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTTACACCCCAGCAGTTGGCAGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATAATTGAAAGTCAAAAGTATGATGCCAAGGCTGATTTATGGAGTGTTGGGGCAATATTGTATCAGTTGGTGATTGGGAGGCCACCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAATATTTTGGCATCTACTGAACTGCACTTTCCACCAGAGGCTTTAAAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAGCCTATTACGTCGAAACCCAGATGAGAGATTAACATTCAAAGCGTTCTTCAATCACAATTTCCTACAGGAACCCAGGTCCATCATGAATATTGAGCAGTTTCAGTTACATCAATCAGAAACATCAATGGTTCATCAATTAGTTGGCTCTGCCTCTGAGAAGATGTCTCAATCACACTCTGAGTATCATGTTGAGTCATTTGTTGATGATCCAGTGGTAGGCAGTTCAGCTGTCAATGAGACCATGCTTTTGCAAAGAAAGGATGGCAAGTTTACAGCTGGCACTAAGAGTGTTAGAGGGTCAACTCCAACTATTGCAAGTGGTAAGCTGGGGAAGTCTGTTGATGCTGGTACTCATTTGCCAAACCAACCTCAAGTATCCCATTTAATGGAGTCCATTGAGAAAGATTATGTCCTCATCAATTCTCATTTTGCATCACTGGAAGCTTTCTCTGACTACTTTGAGGCATCTGTGCAAGATAAATGTTCAAGCAGGGTTTCTATCTGTCCTTCAAAGAGGACTAACCTGGAGACTGGAGTTGCAAAGCAAACAAATGATCTGTCCTCTTCCTCCACTGATGGGTTAGAAGGTTTTAAAAGAAATGAACTTGAGGCATCAGTGGGATTCTGTGAGTTTGCTGCCTCAAGGAAAGAGCAGGGAATTTCGTCTCAGCACCCTTCAAACAGGTTAGGGTTGTTGCATCAGTATGTGCAGATCCTTGGAGAAATTTCGCAAGAAAAGTATAATACAGGACTGTATCTAGAGTCGCTTGCAGTTGAGTTGGTGATTTTAGCTATATGGAAAAAAGCTCTAGAAATTTGTAGCTCTTGGATAGCCTCCATGGCTGAGGGTGAGCTGCCTGGAAGCAGTTCAGCTAATGAATTCATATTTGCCTGTGGAGATGGGAGCATATCACAGACAATGGAACAGAAAATAAACTTTAGTGATCCTCCATCTGTCTCCTTGTGGGCCAAACATGGGTTTATTGTTGCAGTTGATCGTGCTGAGAAATTAACACGTCATATTCAAAACATGGATGGGGCAGCTGAGATGCCAGATGCAATGGAGATTATATTCCGACAAGCACTCTTAATCGGGACAAGTGGTGCTGTAAGTAAACCAACATTGCTCACTTGTCAATGTTTTTTTAACCTAATCTTCCTCAGGCATAGACATATATAG 1935 0.4331 MDLGAPTMTRLVGDYILGPRIGSGSFAVVWRSRHRHSGLEFAVKEIDKTQLSPKVRENLIKEISILSTIDHPNIVRLFEAIQTNDRIYLVLEYCGGGDLAGYINRHGRVSEPIARHFMRQLAAGLQVLQEKNLIHRDLKPQNLLLATTAAMPIMKIGDFGFARSLTPQQLADTLCGSPYYMAPEIIESQKYDAKADLWSVGAILYQLVIGRPPFDGNSQLQLFQNILASTELHFPPEALKELHSDCLDLCRSLLRRNPDERLTFKAFFNHNFLQEPRSIMNIEQFQLHQSETSMVHQLVGSASEKMSQSHSEYHVESFVDDPVVGSSAVNETMLLQRKDGKFTAGTKSVRGSTPTIASGKLGKSVDAGTHLPNQPQVSHLMESIEKDYVLINSHFASLEAFSDYFEASVQDKCSSRVSICPSKRTNLETGVAKQTNDLSSSSTDGLEGFKRNELEASVGFCEFAASRKEQGISSQHPSNRLGLLHQYVQILGEISQEKYNTGLYLESLAVELVILAIWKKALEICSSWIASMAEGELPGSSSANEFIFACGDGSISQTMEQKINFSDPPSVSLWAKHGFIVAVDRAEKLTRHIQNMDGAAEMPDAMEIIFRQALLIGTSGAVSKPTLLTCQCFFNLIFLRHRHI. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11537 644 CDD STKc_ATG1_ULK_like 21 272 - -
Seca4g11537 644 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11537 644 SUPERFAMILY Protein kinase-like (PK-like) 11 314 IPR011009 -
Seca4g11537 644 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11537 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Seca4g11537 644 FunFam Non-specific serine/threonine protein kinase 4 95 - -
Seca4g11537 644 Gene3D Transferase(Phosphotransferase) domain 1 6 344 - -
Seca4g11537 644 MobiDBLite consensus disorder prediction 345 367 - -
Seca4g11537 644 SMART serkin_6 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11537 644 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 10 556 IPR045269 GO:0004674|GO:0006914
Seca4g11537 644 FunFam Serine/threonine-protein kinase ATG1 7 316 - -
Seca4g11537 644 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11537 Seca-Chr4 255012865 255018915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11537 11 291 CBL-interacting serine-threonine protein kinases AT2G30360 34.035 2.50e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Seca4g11537 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11537 - K08269 gmx:100779262 956.822