Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11536 ATGGATGCATACTCCTCTGGCGAAGAAGTGATTGTTAAGACAAGAAAACCATATACAATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTTGAAGCTCTGAAACTACATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAAAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAGTTGGACAAGCTCTTGACATAGACATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCCTATCCTCGGAAGAAGAGTGTTGGTACCACAACGTTACATAGTGGAGCAAAGGATGGAAAACTCAATTCAGTTGAATCCTCACATGTTAAACAAGCATTGGACTTGGAAAAAGAACCACTTCCAGAGGAGGTACCCTGTTCCTCTTTATCTTCGGCAAACAAGAGTTCAATATCAATGTCAATGGCTCTGGGAAATTCAGGCGCCTTAAATGAGATTACACCTTCAGTGAACGAGGTAATAGCACGAGATGGAACAAATGAATCTTTTATCACCTTTGAACTTGAAAATCGGAATTTGGAGAACGATGATGGAAAACATACTAATGGCAGTAGTAAAGAGTCCAAGTTGGAGAATTCTGATGCTTCTCTGAAATTGGTTCAAAATGAGAAAACAGAGGGTCTTAATTGTGCATTAACAATAGATGGGATGCAAGGCAATCAGAATTACCCAAGACATGTTACTGTGCACGTTGTTGATGGGAACCTTGGAACAAGTCCTCAAAATCCATCCAAAGATATGTTGTTTCGAGACTCCATATTTCAGCCATTAGGAGGGGTTAATGGGCAACCTAATCTTTTCACCAATTCAGCTCCATCAAACACAAGTGAAAGTCAAAATAACACAGCACGGTCTTCTATTCATCAATCATTTATTCCTTATCCTCCTCCCTTCACACAACATAATCAAGATGATTACCAATCATTTCTTCACATGTCCTCCACATTTTCAAGTCTGATTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATCCAGAAACTTCAGCGGATTCTCCTAGGTTCTCACAAGGAGCTTTTCCATCTAGACAAATTGGCTCCCCACCAAGTGTGGCAGCCATTGCAGCCGCTACAGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCACCTCTCCATTCTGCTTTTGCCTGTCCTCCTGCATCAGTGACTGCAGTTCCATCAATGACTACTAGCGAAGCACCAGCACCAAAGACAGAGCAAGGAAAAACTACTCTACAAAATCCTCCTCTGCAAGACCAGATACTGGATCCAGAACACTCGGAAGCTCAGCAGGCTCAACATTCAGCTTCTAAGTCACCAGCTGTTGCATCATCAGATTCTGAGAGTGGAGATGCCAAGTTAAATACTTCATCAAAGGCTACTGATCAAGAGATGAACAAAGCTGTTTCTGAGCACATTGATTCCAACAAAACGAAGGGCAGAAAACCGGTTGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGCGAAGTGGAGACTGATGCATTAGAGAAGGATGGGAAAGGAAAGGAAGAGCCTGAAACACCTGATGCTAACCATTTAGCCACTGAATCTAGTAATCGTCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTATCTGAAGAGGTATCCCAGTTAACTCTAATGATATTTTAA 1818 0.434 MDAYSSGEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPVGQALDIDIPPPRPKRKPSNPYPRKKSVGTTTLHSGAKDGKLNSVESSHVKQALDLEKEPLPEEVPCSSLSSANKSSISMSMALGNSGALNEITPSVNEVIARDGTNESFITFELENRNLENDDGKHTNGSSKESKLENSDASLKLVQNEKTEGLNCALTIDGMQGNQNYPRHVTVHVVDGNLGTSPQNPSKDMLFRDSIFQPLGGVNGQPNLFTNSAPSNTSESQNNTARSSIHQSFIPYPPPFTQHNQDDYQSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANPETSADSPRFSQGAFPSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHSAFACPPASVTAVPSMTTSEAPAPKTEQGKTTLQNPPLQDQILDPEHSEAQQAQHSASKSPAVASSDSESGDAKLNTSSKATDQEMNKAVSEHIDSNKTKGRKPVDRSSCGSNTTSSSEVETDALEKDGKGKEEPETPDANHLATESSNRRSRSISNLTDSWKEVSEEVSQLTLMIF. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11536 605 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Seca4g11536 605 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Seca4g11536 605 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Seca4g11536 605 MobiDBLite consensus disorder prediction 297 319 - -
Seca4g11536 605 SMART sant 23 71 IPR001005 -
Seca4g11536 605 MobiDBLite consensus disorder prediction 440 513 - -
Seca4g11536 605 Gene3D - 26 73 - -
Seca4g11536 605 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Seca4g11536 605 MobiDBLite consensus disorder prediction 202 222 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 86 131 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 514 533 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 534 548 - -
Seca4g11536 605 CDD SANT 26 69 IPR001005 -
Seca4g11536 605 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Seca4g11536 605 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Seca4g11536 605 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Seca4g11536 605 PANTHER SWI/SNF COMPLEX-RELATED 7 565 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 549 568 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 569 588 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 106 131 - -
Seca4g11536 605 MobiDBLite consensus disorder prediction 440 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11536 Seca-Chr4 254988560 255001223 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g11536 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11536 K12133 - gmx:100271888 927.161