Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11533 ATGGAAACCGATCCAAAACTCAATGAGGTGGAAGCAAAACAAGTACCACCAAGAAAAGGAGAGCCAAACCTGGAAGATGAAGTAGAAAGCTTCTGCTATGCCATTCAGATGGTGAATTCTGTTTCTCTGCCCATGTCCTTGCATGCTGCTTTGGAGCTTGGAGTGTTAGATATAATAAATAAATCAGGTGCAGGTGCCAAGGTCTCGGCAAAGGACATTGCAGCACAGATTACAAGCAAGAATCCAGATGCAGCCATCATGCTAGATAGGATCCTCATGCTACTAGCCAGTCACTCTGTGCTTCATTGTTCTGTTGTTGCTGATGAAAGTGGTTCTTTCAAGAGATTATACAGTCTAAATTCTGTATCCAAATATTTAGTGCCCAATGAGGATGGGGTGTCGTTGAAGCCTCTCATGGCATTGATTCATGACAAGGTCTTCTTACAAAATTGGTCTCAATTGAAAGAGGCAATGTTGGAAGGGGGTATACCCTTCAACAGAGTTCATGGCATGCATGCCTTTGAGTATCAGAGTTTCGACTCCAGGTTCAATCAAGTATTTAACACGGCAATGAGCAACGTCACGCGTTTGGCAGCAAAGAAGATTCTTGAATCCTACAAAGGCTTTGACCAAATCAACAGCACGCTCGTGGATGTTGGAGGTGGTCTTGGGACTACCCTTAATTTCATCATTTCCAAATACCCACACATTCAGGGTATTAATTTTGACTTGCCTCATGTCATCAAACAAGCTCCATCATACCCGGGTGTGAAGCATGAGGGAGGGGATATGTTTGAAAGTGTTCCGCACGGAGACGCCATATTTCTGAAGCTTGTACTGCATGATTGGAGTGATGAGTGTTGCGTGAAACTGTTGAAGAATTGCTATGATGCTATTCATATTGGTGGGAAGGTAATTGTCGTGGAGCAAGTCCTTCCAACAATGCCTGAAACTAATACTTCCGTTAAATCCACATGCCAAACTGATGTTCTTATGATGACTCAAAATCCTGGAGGAAAGGAGAGAAATGAACAAGAATTTATGGAACTAGCAACAAGATCAGGATTTAGCAGCATTGGATGTGATTGTTTTGCTTATGACCTTAGGATTATGGAGTTCTTCAAAGAGAATCAACATAACCATAATCAACAAGAAATATTAGAAGAAAAAAGCTTCACCTATGCTATGCATCTGGTGAACTCTAGTGTGCTTTCTATGGCCATGCACTCAGCCATTGAGCTTGGCATTTTTGACATCATAGACAAAGCAGGTGTGAATACCAAGCTGTCTGCCAAGGACATTGCAGCCCATCTTCCTTGCAAGAATCCAGATGCAACCACAATGCTTGATCGTATCCTCAGGCTTCTAGCAAGTCACTCCGTGATTGATTGCACTATTGTTGGTGATGAACAAGGTCCTCCACCATATTTGCAGCGACTCTATAGCATAGCCCCTGTTGGCAAATACTTCGCTTGCAATGGTGACAAAAGCCTCTGCATCTGTTCTGTTGTAAGGTACCAATTGAAAGATGCAATTTTGGAAGGAGGTATTCCATTCAACAGAGTCCATGAAAAACATGTATTTGAGTATTCGGACTTGAACCCAAGCTTCAATAAGCTTTTCATGGCAGCGATGACCAACCGTGCCACTTTAATTATGAAGAAGATTCTTGAATATTACAAGGGGTTTGAGCACATCAATAGGCTGGTGGACGTTGGTGGTGGCCTTGGGGTCACTATTAACATAATCACCTCTAAATACCCTCACATTCAGGGCATCAATTTTGATTTACCTCATGTAGTGGAACATGCCTCTCCCTATCCTGGTGTTGAACACGTGGGAGGGGATATGTTTGAAAATGTACCAGAAGGAGATGCCATTTTGATGATGTGTGTACTTCATGATTGGAGTGATGAATTCTGCTTGAAGGTGTTGAAGAACTGTTATGGTGCTATTCCTAATGATGGTAAGGTGATTGTTGTGGAAGGAGTTCTTCCATTTGAACCTGAGACTAGAGCTGCAGTGAAGAGCATTTCTCAATTTGATGTTCTGATGATGACTACAAACCCAGGAGGGAAGGAGCGAAGTGAAGAAGAATTCATGGCATTGGCAAAAGGAGCTGGATTCAATGGCGTTAGATATGCATGCTTTGTCTGTGACGTCTGGGTTATGGAATTCTTCAAGTAG 2187 0.4252 METDPKLNEVEAKQVPPRKGEPNLEDEVESFCYAIQMVNSVSLPMSLHAALELGVLDIINKSGAGAKVSAKDIAAQITSKNPDAAIMLDRILMLLASHSVLHCSVVADESGSFKRLYSLNSVSKYLVPNEDGVSLKPLMALIHDKVFLQNWSQLKEAMLEGGIPFNRVHGMHAFEYQSFDSRFNQVFNTAMSNVTRLAAKKILESYKGFDQINSTLVDVGGGLGTTLNFIISKYPHIQGINFDLPHVIKQAPSYPGVKHEGGDMFESVPHGDAIFLKLVLHDWSDECCVKLLKNCYDAIHIGGKVIVVEQVLPTMPETNTSVKSTCQTDVLMMTQNPGGKERNEQEFMELATRSGFSSIGCDCFAYDLRIMEFFKENQHNHNQQEILEEKSFTYAMHLVNSSVLSMAMHSAIELGIFDIIDKAGVNTKLSAKDIAAHLPCKNPDATTMLDRILRLLASHSVIDCTIVGDEQGPPPYLQRLYSIAPVGKYFACNGDKSLCICSVVRYQLKDAILEGGIPFNRVHEKHVFEYSDLNPSFNKLFMAAMTNRATLIMKKILEYYKGFEHINRLVDVGGGLGVTINIITSKYPHIQGINFDLPHVVEHASPYPGVEHVGGDMFENVPEGDAILMMCVLHDWSDEFCLKVLKNCYGAIPNDGKVIVVEGVLPFEPETRAAVKSISQFDVLMMTTNPGGKERSEEEFMALAKGAGFNGVRYACFVCDVWVMEFFK. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11533 728 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 375 IPR016461 GO:0008168
Seca4g11533 728 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 372 IPR029063 -
Seca4g11533 728 SUPERFAMILY "Winged helix" DNA-binding domain 389 492 IPR036390 -
Seca4g11533 728 Gene3D Vaccinia Virus protein VP39 128 374 IPR029063 -
Seca4g11533 728 Gene3D Vaccinia Virus protein VP39 488 728 IPR029063 -
Seca4g11533 728 PANTHER O-METHYLTRANSFERASE 395 713 IPR016461 GO:0008168
Seca4g11533 728 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 506 726 IPR029063 -
Seca4g11533 728 Pfam Dimerisation domain 406 457 IPR012967 GO:0046983
Seca4g11533 728 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
Seca4g11533 728 Gene3D - 16 126 IPR036388 -
Seca4g11533 728 Gene3D - 375 487 IPR036388 -
Seca4g11533 728 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 396 728 IPR016461 GO:0008168
Seca4g11533 728 FunFam Caffeic acid 3-O-methyltransferase 14 126 - -
Seca4g11533 728 FunFam Caffeic acid O-methyltransferase 127 375 - -
Seca4g11533 728 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g11533 728 Pfam O-methyltransferase domain 506 710 IPR001077 GO:0008171
Seca4g11533 728 Pfam O-methyltransferase domain 151 357 IPR001077 GO:0008171
Seca4g11533 728 SUPERFAMILY "Winged helix" DNA-binding domain 26 130 IPR036390 -
Seca4g11533 728 FunFam Caffeic acid O-methyltransferase 482 728 - -
Seca4g11533 728 FunFam Caffeic acid 3-O-methyltransferase 374 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11533 Seca-Chr4 254943054 254958525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11533 385 728 Monolignol Biosynthesis Gene Families AT5G54160 48.459 7.73e-116 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11533 K13066 - atri:130806785 679.863