Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11532 ATGAGTTCTTCTGTGATACTTCCCCTGGCAGTGAGGACTGCAGTTGAGCTGGGAATCTTCGATATACTAGCTAGAGCAGGTGAGGGTCTCTCAGCAGAGGACATAGCAGTTAAGGTTGGGTCAAAGAACCCAGAAGCACCCTCAATGTTGGATCGTCTTCTGAGGTTGTTGACTAGTCACTCAATGCTATATTGTTCTCTTGCTGAACCTGAAGGTGAAGAACAGGGGAATGCTTCTTCTTCTCCTCCTCAGAGACTCTATAGGCTCGCCCCTAGATCCAAGTACTTTGTCACCGATGCTGATGGTGTGTCATTTGGACCTACACTCAGGACTGAACTAAAAGGAGCAATATTGGAAGGAGGTATACCATTCAATAGGGTTTATGGCATGCACGCATTTGAGTACCCAAGTGTAGATCCTAGGTTCAATGATGTTTTCAACAAAGCTATGGTCAATTGTACCACTATAGTTATGAAAAGGGTTCTTGAGTTCTATGAAGGTTTTGAGCACATCAACAAATTGGTGGATGTTGGAGGTGGTCTTGGGATCAATCTCAAGCTCATCACTTCAAAATATCCCCATGTCCAAGGTGTTAATTTTGACTTGCCTCATGTTATAGAGCATGCCCCAACATATGCTGGTGTGACACATGAGGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTTATGAAGTGGATACTTCATGACTGGAGTGATGAGCACTGTTTGAAGTTGTTGAAGAATTGCCATAAAGCTATTCCTAGTGATGGAAAAGTGATTGTTGTTGACTCAATTCTTCCTGTTTTGCCTGAGAGTACAACTATTGCTAAATCTAGCTTCCAAGCCGACCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACCCAAAATGAATTCATGGCATTGGCATTAGGTTCTGGATTTAGTGGTATTAGATTCGTCTGCTTTGTCTCTGGATTCTGGAATTCATTAGAAAATAATAAAGGTGAAGCAAAGCAAGGAGGCAATGTGCAAGAAGATGATGGCATTATTTTTGCCATGAGCATGATGTCTTCTATTGTATTTCCACAAGCGGTTCGGTCAGCAGTTGAGCTCGGTATCTTTGACATCTTAGCCAAAGCAGGGGAAGGTGTCAACCTCTCTTCAAAGGACATTGCAATTCAAATTGCCTCAAAGAACCCAGAAGCACCTATAATGCTAGATCGCCTCCTAAGATTATTGGCTAGTCACTCTATGCTTTATTGTTCACTTACTGAAGATCATCAAGGGCATGAGCCTCCTCAAAGGCTCTATAGGCTCGCCCCTGCATCCAAGTACTTTGTGACCGATGTTGATGGTGTGTCATTTGGACATACTTTGAACTTACTCCTAGACAAGCTTAAGGGAGCAATCTTGGAAGGAGGTATACCCTTCAACAGGGTTCATGGAATGAATGCATTTGAGTATCCAAGTGTGGATCCTAGGTTCAATGATGTTTTCAACAAAGCTATGCTCAACATTACCACTATACTCATGAAGAGGGTTCTTGAGTTCTACAAAGGTTTTGAGAACATCAATAGACTAGTGGATGTTGGTGGAGGTCTTGGAATCAATCTCAAGCTAATCACTTTAAAATATCCTCATGTCCAGGGTGTTAATTTTGATTTGCCTCATGTCATAGAGCATGCCCCTACATATGTTGGCGTGACACATGTGGGAGGGGATATGTTTGAGAGTGTGCCTAATGGAGATGCCATTTTTATGAAGTGGATACTTCACGACTGGAGTGATGAACACTGTTTGAAGTTGTTGAAGAATTGCCACAAAGCTATTCCAAGTGATGGAAAAGTGATTGTTGTGGACTCAATTATTCCCGTTTTGCCAGAAAGTACACTCATTGCCCAAAATGGTTTTCAAGCTGACCTTCTAATGATGACTCAAAACCCAGGAGGAAAAGAGCGAACCCAAAATGAATTCTTAGAATTGGCATTACAATCTGGATTTAGTGGTATTAGACACGTCTGTTGTGTCTCTGGTTTATGGGTTATGGAGTTTTTCAAGTAG 2061 0.4207 MSSSVILPLAVRTAVELGIFDILARAGEGLSAEDIAVKVGSKNPEAPSMLDRLLRLLTSHSMLYCSLAEPEGEEQGNASSSPPQRLYRLAPRSKYFVTDADGVSFGPTLRTELKGAILEGGIPFNRVYGMHAFEYPSVDPRFNDVFNKAMVNCTTIVMKRVLEFYEGFEHINKLVDVGGGLGINLKLITSKYPHVQGVNFDLPHVIEHAPTYAGVTHEGGDMFESVPNGDAIFMKWILHDWSDEHCLKLLKNCHKAIPSDGKVIVVDSILPVLPESTTIAKSSFQADLLMMTQNPGGKERTQNEFMALALGSGFSGIRFVCFVSGFWNSLENNKGEAKQGGNVQEDDGIIFAMSMMSSIVFPQAVRSAVELGIFDILAKAGEGVNLSSKDIAIQIASKNPEAPIMLDRLLRLLASHSMLYCSLTEDHQGHEPPQRLYRLAPASKYFVTDVDGVSFGHTLNLLLDKLKGAILEGGIPFNRVHGMNAFEYPSVDPRFNDVFNKAMLNITTILMKRVLEFYKGFENINRLVDVGGGLGINLKLITLKYPHVQGVNFDLPHVIEHAPTYVGVTHVGGDMFESVPNGDAIFMKWILHDWSDEHCLKLLKNCHKAIPSDGKVIVVDSIIPVLPESTLIAQNGFQADLLMMTQNPGGKERTQNEFLELALQSGFSGIRHVCCVSGLWVMEFFK. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11532 686 Gene3D - 6 161 IPR036388 -
Seca4g11532 686 PANTHER O-METHYLTRANSFERASE 352 667 IPR016461 GO:0008168
Seca4g11532 686 FunFam Caffeic acid O-methyltransferase 447 686 - -
Seca4g11532 686 Gene3D Vaccinia Virus protein VP39 143 322 IPR029063 -
Seca4g11532 686 FunFam Caffeic acid 3-O-methyltransferase 331 446 - -
Seca4g11532 686 SUPERFAMILY "Winged helix" DNA-binding domain 3 100 IPR036390 -
Seca4g11532 686 CDD AdoMet_MTases 526 619 - -
Seca4g11532 686 Gene3D - 360 514 IPR036388 -
Seca4g11532 686 FunFam Caffeic acid O-methyltransferase 95 332 - -
Seca4g11532 686 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 334 IPR016461 GO:0008168
Seca4g11532 686 Pfam Dimerisation domain 365 414 IPR012967 GO:0046983
Seca4g11532 686 Pfam Dimerisation domain 10 58 IPR012967 GO:0046983
Seca4g11532 686 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 464 684 IPR029063 -
Seca4g11532 686 Pfam O-methyltransferase domain 112 315 IPR001077 GO:0008171
Seca4g11532 686 Pfam O-methyltransferase domain 465 668 IPR001077 GO:0008171
Seca4g11532 686 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 324 IPR029063 -
Seca4g11532 686 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 353 686 IPR016461 GO:0008168
Seca4g11532 686 Gene3D Vaccinia Virus protein VP39 496 676 IPR029063 -
Seca4g11532 686 SUPERFAMILY "Winged helix" DNA-binding domain 345 449 IPR036390 -
Seca4g11532 686 FunFam Caffeic acid 3-O-methyltransferase 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11532 Seca-Chr4 254918560 254925980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11532 342 686 Monolignol Biosynthesis Gene Families AT5G54160 51.841 1.43e-125 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11532 K13066 - atri:130806785 644.81