Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11530 ATGCCATTCCTGCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAGCTTTCAAACACTTTTGAGGCTGCAGCATCTCAAGAAACCATGGGAAGGGATAGCCTATATCCCCAGCATGGACACCCAACAACAAGTTCAAGCAGCAGCATTAGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAATCAGAAAGCAATGAGCTTCAACACCCACGTTCAGCTTCATGTGTTGAGAAACTGAACTGTTATGAGTGCAACCAGGAATTACCACCCAAAACAGCACAATCATGCCCCAAATCTCAGCCACCAGCAACAAGGGAAAAGAGAAAGAGAAAGAGAACAAGGCCAACTAAGAACAAGGAAGATGTGGAGAATCAACGAATGACCCACATTGCTGTTGAACGCAACCGACGACGCCAAATGAATGACCACCTCAGTGTTCTAAGGTCCATCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCTTCAATCATTGGAGGTGCAATTGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCCCTTGAAGCACAAAAAAGGATAAGAAAAAATGAAGAGAGTGGTTCTTCCAATGGATTGTCTAAGGCATCATTATCAGTATCATCTGCTTATGGAATGAGGTCATCATCCACTGAAGAAGATGAGGTGAAGGCAGAAAACAAGTCAGATGCAGCAGACATAAAGGTCACCTTGATTCAAACCCATGTGAACCTGAAAATTGAATGCCAAAGGAGACCTGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTTAACATCACCTCCTCCGAGGCTTCTGTCCTATACTCTCTCAATCTCAAGATTGAAGAAGACTGTAAACTAGGCTCAGCAAATGACATTGCAGAAGCAGTTCATCGTATATTCAGCTTTATTAATTGCAGCTAA 990 0.4374 MPFLQMLQSVESPQFFPLKEPSFQTLLRLQHLKKPWEGIAYIPSMDTQQQVQAAALELESCVTHDMLEMQSPVKSESNELQHPRSASCVEKLNCYECNQELPPKTAQSCPKSQPPATREKRKRKRTRPTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSIMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRIRKNEESGSSNGLSKASLSVSSAYGMRSSSTEEDEVKAENKSDAADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSEASVLYSLNLKIEEDCKLGSANDIAEAVHRIFSFINCS. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11530 329 Gene3D - 127 216 IPR036638 GO:0046983
Seca4g11530 329 MobiDBLite consensus disorder prediction 102 139 - -
Seca4g11530 329 PANTHER TRANSCRIPTION FACTOR FAMA 76 323 IPR044283 GO:0003700|GO:0010052
Seca4g11530 329 CDD bHLH_AtFAMA_like 140 210 - -
Seca4g11530 329 Coils Coil 185 205 - -
Seca4g11530 329 Pfam Helix-loop-helix DNA-binding domain 138 189 IPR011598 GO:0046983
Seca4g11530 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 188 IPR011598 GO:0046983
Seca4g11530 329 SMART finulus 143 194 IPR011598 GO:0046983
Seca4g11530 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11530 Seca-Chr4 254905252 254907697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11530 6 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 42.308 7.43e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g11530 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11530 - - gmx:100789928 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11530 4 254905252 254907697 Seca4g11530 4 254905252 254907697 ECH