Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11529 ATGGAAGCACAAAGCTCTCAGCATGAGCAAGTTGTTGAAATCAGTGGAGATCTTCCTGATGAGGGAAGGAAAATTTGTGGGGAAGCACCATGTGGGTTCTCTGATGCTGGATCCGTCTCTAAGGATTCTCAAGAGCGATCAACTTCCATGCGAAAGCTTTTGATGGCAGTGGTGCTTTGTGTTATTTTCATGACCATTGAAGTAGTTGGTGGCATCAAAGCTAACAGTCTTGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCTGCCTTTGCCATCTCCTTATTTTCTTTATGGGCTGCGGGATGGGAAGCTACTCCTCGTCAGTCATATGGATTCTTTAGAATAGAGATTCTTGGTGCTTTGGTTTCTATCCAATTAATATGGCTGCTTGCTGGCATTCTGGTATACGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGTTTTTTAATGTTCTTAGTAGCAGCATTTGGTCTCGTGGTTAACATCATTATGGCATTTTTATTGGGCCATGATCACGGCCATGGACATGACCATCATGGCCATGGGCACGGCCATGGACATGGTCATCATGGCCACAGCCATGGATTTTCAGTGTCTACCCACCATGATGTAAAGCATGCAAAAGATGAGCACCATCACACTCATGATGTTCACACACACCATCATGAGGAAAAGCATCCAAAAGATGCACACCAACACTCTCATGAAGATCACATGCACCATGATGCCCACAAAGAGGTTACTGAACCACTTCTGGGTGAATCAGAAAGCAGATCAGAGAAGAAGAAGAAGCAGAAGAACATAAATGTACAGGGAGCGTATCTCCATGTACTTGGGGACTCAATCCAGAGTGTTGGGGTAATGATAGGGGGAGCAATCATATGGTATAAACCTGATTGGCAAATAGTTGATTTAATTTGCACTCTAATCTTCTCAGTAATTGTTTTGGGTACAACAATCAACATGCTGCGTAACATTTTGGAAGTCCTGATGGAAAGCACACCACGTGAGATTGATGCTACTGAGCTGGAAAGTGGGCTATTACAGATGGAAGAAGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATTACGGTGGGGAAGGTTTTGCTAGCTTGTCATGTTAAAATCAGACGTGATGCAGATGCAGACATGGTGCTAGACAAGGTTATAGACTACATCAGAAGGGTTTATAACATCAGTCATGTAACTATACAGATAGAGCGCTAG 1251 0.4341 MEAQSSQHEQVVEISGDLPDEGRKICGEAPCGFSDAGSVSKDSQERSTSMRKLLMAVVLCVIFMTIEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIDRIIAGPKNVDGFLMFLVAAFGLVVNIIMAFLLGHDHGHGHDHHGHGHGHGHGHHGHSHGFSVSTHHDVKHAKDEHHHTHDVHTHHHEEKHPKDAHQHSHEDHMHHDAHKEVTEPLLGESESRSEKKKKQKNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPDWQIVDLICTLIFSVIVLGTTINMLRNILEVLMESTPREIDATELESGLLQMEEVVAVHELHIWAITVGKVLLACHVKIRRDADADMVLDKVIDYIRRVYNISHVTIQIER. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11529 416 Gene3D Cation efflux protein transmembrane domain 49 337 IPR027469 -
Seca4g11529 416 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 7 416 - -
Seca4g11529 416 MobiDBLite consensus disorder prediction 203 252 - -
Seca4g11529 416 MobiDBLite consensus disorder prediction 182 252 - -
Seca4g11529 416 SUPERFAMILY Cation efflux protein transmembrane domain-like 47 339 IPR027469 -
Seca4g11529 416 MobiDBLite consensus disorder prediction 183 202 - -
Seca4g11529 416 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 344 415 IPR036837 -
Seca4g11529 416 Pfam Cation efflux family 53 338 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca4g11529 416 NCBIfam cation diffusion facilitator family transporter 50 416 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11529 Seca-Chr4 254891844 254896393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11529 24 416 Inorganic Solute Cotransporters AT3G61940 58.629 8.35e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11529 K14689 - gmx:100790458 641.728