Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11516 ATGTCTCAACAAAGGCAACCTCAGATGGTGGGTGGTAACAATTTGGACCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACAGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCACAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATAGACAACTACCTCTTCAGCATGGTCTCAATCCTTCCATTCTCTTTTGTCTACTCTGTTCTTTGTTTTTTCTTCATATCTTGTGA 402 0.4204 MSQQRQPQMVGGNNLDQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACHNPSPVIDGRRANCNLASLGANKNRQLPLQHGLNPSILFCLLCSLFFLHIL. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11516 133 PANTHER BOULE-RELATED 12 109 - -
Seca4g11516 133 SMART rrm1_1 25 97 IPR000504 GO:0003723
Seca4g11516 133 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 18 105 - -
Seca4g11516 133 Gene3D - 1 109 IPR012677 -
Seca4g11516 133 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Seca4g11516 133 CDD RRM_RBM24_RBM38_like 24 99 - -
Seca4g11516 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Seca4g11516 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11516 Seca-Chr4 254641654 254642971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11516 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 5.96e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11516 - - pvu:PHAVU_010G118600g 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11516 4 254641654 254642971 Seca4g11516 4 254641654 254642971 ECH