Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11514 ATGGGGAAGAAAGGAAGTAGCTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACACTGACAAAAGGAGTGGTAGAAGAAGAGAGGACTATGATCAAGAAGAAGATGAAGAGAAGAAGAGAGAAAAACGAAGGTGGATTTTCAGGAAAGCTGTGAATCATGAAACGGTGAACACTCAACAAACTCCAACAAAGTTGAAGCATGATGTGGCTTCAAGGAAAGACCAAGATCAAAAACATGCTCTTGCTGTGGCAGTGGCCACCGCAGAGGCAGCCATGGCCACCGCTCAAGCTGCTGTGGAGGTGGCAAGGTTGACCAAGCCTTCTTCTGCTAATCATGTTTCTGCAAAGGAGCATTATGCTGCTGTTGTGATTCAAACTGCTTTCAGAGGATATCTGGCAAGAAGAGCACTTCGTGCGCTTAAGGGGCTGGTGAAGTTGCAAGCTTTAGTAAGGGGTCACAATGTTAGGAAGCAAGCAAAGATGACCCTTCGGTGCATGCAGGCTCTGGTTAGAGTACAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCCCTTGATGGAAGTAGAAAATCCACCTTCAGTGACACTGCCAGCGTTTGGGAATCACGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAAGGAAGTAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGACAAGTCCTTGTCCCAAGCTTTTTCACAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGCACAGAAGATGAGCTTGAAGAGAGACCAAAATGGTTGGACAGGTGGATGGCTGCAAAGCCATGGGAGAGCAGGGGAAGAGCTTCAACAGATCAAAGAGACCCCATTAAGACTGTGGAAATTGACACATCTCAACCTTATTCATATCTAGGAACTAATTACAGAAGATCACATCCAAATTATCAGTATAACCCACACCACCACCAACCACAAAGACATTCAATTGCTTCCCCACTCCACAGAACCCATCAAAATAGTGGATCCCTTCACCAATCACTCACAACCCCTTCTCCAGCAAAATCAAGACCCATCCAAGTCCGTTCTGCAAGCCCTCGTTGTGTTAGAGAAGATAGAAGCTACCACAGTTCACAATCTCAAACACCAAGCCTGAGGTCTAATTACCATTACACAGGGAACTTGTACCAAAATGGTAGTAGCAGGGTAGTAGGAACAAGTAATAGTGGTGGTGCTAACTTGCCTAATTACATGGCAGCAACTGAGTCTGCAAAGGCTAGAATTAGATCACAGAGTGCACCAAGGCAGAGGCCATCTACACCAGAGAGGGATAGAGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCAGATCCATATAATGTAGGAGTGGGTTATGGAAATTATGGGCATAATTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGCATCACATTTTGGATTGGAGCAACAATCCAACTACTCTTCTTGCTACACGGAGAGTCTTGGTGGTGGTGAGGTTTCTCCTTCTTCCACTGGTGACCTTAGAAGGTGGTTGAGATGA 1626 0.4557 MGKKGSSSWLTAVKRAFRSPTKDTDKRSGRRREDYDQEEDEEKKREKRRWIFRKAVNHETVNTQQTPTKLKHDVASRKDQDQKHALAVAVATAEAAMATAQAAVEVARLTKPSSANHVSAKEHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWESRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKSLSQAFSQQIWRNGRTSSIGTEDELEERPKWLDRWMAAKPWESRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPLHRTHQNSGSLHQSLTTPSPAKSRPIQVRSASPRCVREDRSYHSSQSQTPSLRSNYHYTGNLYQNGSSRVVGTSNSGGANLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYNVGVGYGNYGHNLRSPSFKSVSASHFGLEQQSNYSSCYTESLGGGEVSPSSTGDLRRWLR. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11514 541 Gene3D - 119 174 - -
Seca4g11514 541 MobiDBLite consensus disorder prediction 314 379 - -
Seca4g11514 541 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Seca4g11514 541 MobiDBLite consensus disorder prediction 517 541 - -
Seca4g11514 541 PANTHER IQ-DOMAIN 5-RELATED 1 477 - -
Seca4g11514 541 MobiDBLite consensus disorder prediction 395 413 - -
Seca4g11514 541 MobiDBLite consensus disorder prediction 298 313 - -
Seca4g11514 541 MobiDBLite consensus disorder prediction 58 77 - -
Seca4g11514 541 Pfam IQ calmodulin-binding motif 149 165 IPR000048 GO:0005515
Seca4g11514 541 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Seca4g11514 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 166 IPR027417 -
Seca4g11514 541 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Seca4g11514 541 MobiDBLite consensus disorder prediction 444 477 - -
Seca4g11514 541 FunFam IQ-domain 11 121 172 - -
Seca4g11514 541 MobiDBLite consensus disorder prediction 1 48 - -
Seca4g11514 541 MobiDBLite consensus disorder prediction 298 413 - -
Seca4g11514 541 Pfam Protein of unknown function (DUF4005) 385 490 IPR025064 -
Seca4g11514 541 MobiDBLite consensus disorder prediction 18 48 - -
Seca4g11514 541 SMART iq_5 144 165 IPR000048 GO:0005515
Seca4g11514 541 SMART iq_5 121 143 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11514 Seca-Chr4 254629253 254631856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11514 9 541 IQD Protein Family AT4G00820 58.214 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11514 - - gmx:100786729 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11514 4 254629253 254631856 Seca4g11514 4 254629253 254631856 ECH