Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11512 ATGAGCACGAAGGCGGCGAAACCTCGTACCCGGGTAGGGAAGTACGAGCTGGGAAAAACCATTGGTGAGGGAAGCTTTGCGAAGGTAAAGTTCGCTAAGGACGTAGAGACTGGGAAACATGTAGCCATCAAAATCCTTGATCGCAACCACGTCCTTCGCCATAAGATGATGGAACAGCTGAAGAAAGAAATTTCGGCGATGAAGCTGATCAATCATCCAAACGTTGTCAAAATATTTGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTTTTGGAGTTGGTTAATGGAGGAGAACTGTTTGACAAAATAGCTACAAATGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTCTATCACCGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCAAATGGTGTTCTTAAAGTCTCAGATTTTGGATTGAGCACATACGCACAGCAGTTGCAGGAGGGTGAACTACTCCGCACTGCTTGTGGAACACCAAATTATGTGGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTGCATCTGATATCTGGTCCTGTGGAGTTATTCTCTTTGTACTCATGGCTGGGTTCTTGCCTTTTGATGAACCAAATCAGTTGGCACTGTACAGGAAAATTGGCAGGGCTGACTTCATATGTCCATCTTGGTTTTCACCTGAGGCAAAGAAACTGCTCAAGTCTATTCTTGATCCAAACCCTCTAACAAGGATAAAAATTCCTGAGCTCTTACAAAATGAATGGTTCAAAAAAGGATACAAGCCACCATGTTTTACTGAGGATGAGGATGTCAATGTAGATGATGTAGCTGCTGCTTTCGATGATTCTAAGGTACTGTGTTCTTCACAATATTTCTGTTTAATGCTCATGCAGAGAAAAGAGAAACCCGTGTCAATGAATGCTTTTGAGCTCATTTCTAGGTCCCAAAGCTTCAATCTTGACAGTTTGTTTGAGAAGCAGACAGGAGTTGTAAAGCGTGAAACACATTTCACATCACAGCACCCTGCAAATGAAATCATGTCTAAAATTGAGGAAACTGCCAAGCCTCTGGGCTTTAATGTTCACAAGCGAAATTATAAGATGAAGCTGCAAGGAGATAAGAGTGGAAGGAAGGGTCATCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCGCCCTCCTTGCACATGGTGGAGCTGCGAAAGACAGGGGGTGACACACTTGAGTTTCATAAGTTCTACAAAACCTTTTCATCAGGGTTGCAAGACATAGTGTGGCATAGTGAAGCAAAACAATGA 1338 0.4253 MSTKAAKPRTRVGKYELGKTIGEGSFAKVKFAKDVETGKHVAIKILDRNHVLRHKMMEQLKKEISAMKLINHPNVVKIFEVMASKTKIYIVLELVNGGELFDKIATNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGVLKVSDFGLSTYAQQLQEGELLRTACGTPNYVAPEVLNDRGYVGSASDIWSCGVILFVLMAGFLPFDEPNQLALYRKIGRADFICPSWFSPEAKKLLKSILDPNPLTRIKIPELLQNEWFKKGYKPPCFTEDEDVNVDDVAAAFDDSKVLCSSQYFCLMLMQRKEKPVSMNAFELISRSQSFNLDSLFEKQTGVVKRETHFTSQHPANEIMSKIEETAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKTFSSGLQDIVWHSEAKQ. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11512 445 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Seca4g11512 445 FunFam Non-specific serine/threonine protein kinase 8 305 - -
Seca4g11512 445 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Seca4g11512 445 Pfam NAF domain 317 377 IPR004041 GO:0007165
Seca4g11512 445 Gene3D Kinase associated domain 1, KA1 314 440 - -
Seca4g11512 445 FunFam Non-specific serine/threonine protein kinase 314 440 - -
Seca4g11512 445 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11512 445 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11512 445 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Seca4g11512 445 SUPERFAMILY Protein kinase-like (PK-like) 12 301 IPR011009 -
Seca4g11512 445 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11512 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Seca4g11512 445 Gene3D Transferase(Phosphotransferase) domain 1 95 295 - -
Seca4g11512 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 425 - -
Seca4g11512 445 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Seca4g11512 445 CDD CIPK_C 321 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11512 Seca-Chr4 254593013 254599541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11512 2 443 CBL-interacting serine-threonine protein kinases AT1G01140 72.383 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca4g11512 Pkinase 2.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11512 - - gmx:100794136 758.059