Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11507 ATGGAAGATTTGATCATCTCTCCTTCTTCTTCCTCCTCTCTGCCTCAGAAAAACCCATCACCACCACCAACCCTTCAGCAAAAGCTTCAATTTTTACTCCAAAGCCAACCCGATTGGTGGGTCTATGCCATTTTCTGGCAGACCTACAACGATGAAAAAGGTAACCTGTACTTATCCTGGGGAGAAGGCTATTTCCAAGGCACAAACGAGACTTCCCCAAAACCACAGCCACTCCCTCACTACCCCATTTCCACAGAGCAAAGGAAGTTCATGATCAACGACAACGTGGAAACCAACACGAGTACAAACGGCGAGGCAGAGTGGTTCTACGTGATGTCGTTGACTCGCACCTTCTCCGTCGGCAATGCTTCTTCCTCTTCCCTCCCTGGCAAGGCCTACGCTTTAGGGTCAGTACTGTGGCTAAACAGCAAGGACGAGCTTCAATTCTACAACTGCGAGAGGTCCAATGAGGCACACTTACACGGGATTCAAACCTTGATCTGCATCCCAATCCCAAACGGCGTCGTTGAAATGGGTTCCTACTACAACATTCAAGAAAACTGGACTCTCGTCCACCAAGTCAAATCCATCTTCGAATCATCATCATCATCTTCAGATCTCAATCTCATGACCACACAAGTACAGGACGAAAACAACAACAACAACAACACAATCGAAATGTTCGACAGCCACAACATCTCCTTCGCTGATATCGGCATCATCACCGGCGTTCAAGAACCACAGGACAATAACAGAAAAAAAAGGACATTGGAACCAAAGATTGGTTCCTCATCACTACTTTATATGGATTCTGATCACTCTGATTCAGATTCTCCACCATCCGCAACTCACATCGTACCAGAAAAGAAGGAACGGAAGAAGAGAGGGAGGAAACCGCTTATAGGACGCGAGACTCCGATAAACCATGTAGAAGCTGAGAGGCAGAGGAGGGAGAAGCTGAACCATCGTTTCTATGCTTTAAGAGCTGTTGTGCCGAACGTTTCGAGGATGGATAAGGCTTCTCTGTTGTCTGATGCGGTGGCTTACATCAATGAGCTGAAGGCAAAGATTGAAGATTTGGAGTCTCAGCAGGTTAATAATAAGGAGTGTAGCAAGAAGGTGAAGTCGGAAATGGGAGATACGATGGACAACCAGAGCACAACCACAACTTCCACTGTGGTTGACCAAACAGGGCATAATGGTTCTGGGATTGAGATTGATGTGAAGATAATAGGGTCTGATGCGATGGTGAGGGTTCAATCGGAGAGTGTGAATCACCCTGGAGCAAGGCTAATGGGTGCATTGAGGGACTTGGAGTTTCAGGTACACCATGCTAGCATTTCATGTGTTAATGACCTTATGGTTCAAGATGTTATTGTTAAGGTTCCTAATGGGATAAGAAGCGAGGAGGGTCTTAAATCTGCAATTCTCATGAGATGGGATCAATAG 1449 0.4617 MEDLIISPSSSSSLPQKNPSPPPTLQQKLQFLLQSQPDWWVYAIFWQTYNDEKGNLYLSWGEGYFQGTNETSPKPQPLPHYPISTEQRKFMINDNVETNTSTNGEAEWFYVMSLTRTFSVGNASSSSLPGKAYALGSVLWLNSKDELQFYNCERSNEAHLHGIQTLICIPIPNGVVEMGSYYNIQENWTLVHQVKSIFESSSSSSDLNLMTTQVQDENNNNNNTIEMFDSHNISFADIGIITGVQEPQDNNRKKRTLEPKIGSSSLLYMDSDHSDSDSPPSATHIVPEKKERKKRGRKPLIGRETPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEDLESQQVNNKECSKKVKSEMGDTMDNQSTTTTSTVVDQTGHNGSGIEIDVKIIGSDAMVRVQSESVNHPGARLMGALRDLEFQVHHASISCVNDLMVQDVIVKVPNGIRSEEGLKSAILMRWDQ. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11507 482 Pfam Helix-loop-helix DNA-binding domain 308 353 IPR011598 GO:0046983
Seca4g11507 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Seca4g11507 482 MobiDBLite consensus disorder prediction 376 398 - -
Seca4g11507 482 PANTHER MYC 12 479 IPR045084 GO:0003700|GO:0006355
Seca4g11507 482 MobiDBLite consensus disorder prediction 244 314 - -
Seca4g11507 482 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g11507 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 364 IPR036638 GO:0046983
Seca4g11507 482 MobiDBLite consensus disorder prediction 380 398 - -
Seca4g11507 482 Gene3D - 301 369 IPR036638 GO:0046983
Seca4g11507 482 Coils Coil 343 370 - -
Seca4g11507 482 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 198 IPR025610 -
Seca4g11507 482 CDD bHLH_AtAIB_like 302 378 - -
Seca4g11507 482 SMART finulus 310 359 IPR011598 GO:0046983
Seca4g11507 482 MobiDBLite consensus disorder prediction 267 281 - -
Seca4g11507 482 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11507 Seca-Chr4 254516575 254518023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11507 25 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 36.262 5.57e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g11507 bHLH-MYC_N 2e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11507 - K13422 gmx:100804965 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11507 4 254516575 254518023 Seca4g11507 4 254516575 254518023 ECH