Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11503 ATGGGCCAGTGCTACGGCAAGACCAATCCCACACCGGAAAATGACAACACCACCGCCACAGTTGCCGGACCCAGCGACCTCCCGCTCTCTCCGGCGCCGTCCTCCACCGCCGGAACCGGGAACGGATTTCCGTCGGTGAAGGGCACGCCAGCTCGGTCCTCCTCCGCCGCGAGCCCCTGGCCCAGCCCGTACCCTCATGGCGGCGGAGTGACGCCGTCTCCGGCGAGGGGTACGCCGAGGAGGTTTTTCCGGCGACCGTTTCCGCCTCCTTCGCCTGCGAAGCATATAAGGGCGTCGCTGGCGAAGCGGCTGGGTCACGCGAAGACGCCGAAGGAAGGGCCGATACCGGAGGAGGAACGGGTGGCGGAGGAGACGCTGGATAAGAGCTTTGGGTATAGCAAAAATTTTGGGGCAAGGTTTGAGCTTGGGAAGGAAGTGGGGAGAGGGCATTTTGGTCATACTTGCTATGCCAGGGGCAAGAAGGGTGACCTAAAAGACCAACATGTAGCTGTTAAGATTATTTCCAAGGCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGTAGAGAGGTGAAGATATTAAAAGCACTATCTGGCCATAAGCATCTTGTCAAATTTCATGATGCCTTTGAGGATGCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATACAGAGGAGGATGCCAAGGTTATAATTTTGCAGATCCTTAGCGTAGTTGCTTTTTGTCATCTTCAAGGCGTTGTGCACCGTGACCTGAAACCCGAGAATTTCCTCTTCACTTCAAGAAGTGAAAATGCTGATATGAGGCTTATTGATTTTGGTCTGTCTGACTTCATCAGGCCAGATGAACGGCTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCATATAGTCTGGAGGCAGATATATGGAGTATTGGTGTTATTACCTATATCTTGTTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTTCTTCGAGCTGAACCTAACTTTGATGATTTACCTTGGCCATCTGCCTCTGCAGAGGCCAAGGACTTTGTAAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGTCCAAGCTCTAACTCATCCTTGGTTGAGGGATGACAGCCGTCCCATCCCTTTGGATATATTAGTCTATAAACTAGTGAAGGCTTATCTTCATGCGACACCATTCAAACGTGCAGCATTGAAGGCCCTTTCAAAAGCCCTGACAGAGGATGAATTGCCCTATCTTAGGGCACAATTCAGACTATTGGAACCAAATAGAGACGGGCACATCTCCCTTGAGAATTTCAAAATGGCTCTTGTGCGCCATGCAACTGATGCCATGAGTGAGTCCAGGGTTTTTGATATCATACATGCGGTGAGGCATTATTCTTATGTATTGAGCAAATATCTTTGGCATGTTGGATACTGA 1527 0.4938 MGQCYGKTNPTPENDNTTATVAGPSDLPLSPAPSSTAGTGNGFPSVKGTPARSSSAASPWPSPYPHGGGVTPSPARGTPRRFFRRPFPPPSPAKHIRASLAKRLGHAKTPKEGPIPEEERVAEETLDKSFGYSKNFGARFELGKEVGRGHFGHTCYARGKKGDLKDQHVAVKIISKAKMTTAIAIEDVRREVKILKALSGHKHLVKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYTEEDAKVIILQILSVVAFCHLQGVVHRDLKPENFLFTSRSENADMRLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRAEPNFDDLPWPSASAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRPIPLDILVYKLVKAYLHATPFKRAALKALSKALTEDELPYLRAQFRLLEPNRDGHISLENFKMALVRHATDAMSESRVFDIIHAVRHYSYVLSKYLWHVGY. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11503 508 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11503 508 FunFam CDPK-related kinase 1 133 228 - -
Seca4g11503 508 FunFam CDPK-related kinase 1 438 501 - -
Seca4g11503 508 Gene3D Transferase(Phosphotransferase) domain 1 229 412 - -
Seca4g11503 508 MobiDBLite consensus disorder prediction 1 94 - -
Seca4g11503 508 Gene3D - 420 495 - -
Seca4g11503 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 489 - -
Seca4g11503 508 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Seca4g11503 508 SUPERFAMILY EF-hand 428 490 IPR011992 -
Seca4g11503 508 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Seca4g11503 508 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Seca4g11503 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Seca4g11503 508 FunFam CDPK-related kinase 3 132 304 - -
Seca4g11503 508 SUPERFAMILY Protein kinase-like (PK-like) 139 423 IPR011009 -
Seca4g11503 508 CDD STKc_CAMK 139 401 - -
Seca4g11503 508 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11503 508 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11503 508 FunFam Calcium-dependent protein kinase SK5 312 411 - -
Seca4g11503 508 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11503 Seca-Chr4 254451321 254460644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11503 1 497 EF-hand Containing Proteins AT3G50530 59.225 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g11503 Pkinase 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11503 - - gmx:100796256 827.394