Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11496 ATGACAAGCCACATTGATAACCTCTGGGTGCTGGCCTTAGCTTCCAAATGCACCCAAGAAAACATTGCATGGTCACTTTTGATCATGGCCATACTCTGGCTAGCCATGACTTTCTTTTACTGGTCTCACCCTGGTGGTCCTGCTTGGGGCAAGTACTACTCCTACTCTACCTGGAGAAAAACCTCTCCTAGTACTACTACTTCAGAAATAATAATTCCTGGTCCCAAAGGCTATCCTTTAATTGGAAGCATGAACCTCATGTCCTCACTTGCACACCACCGTATTGCAGCGGCGGCAAAAGCATGCAACGCCACCAGGCTCATGGCTTTCAGCCTCGGTGACACACGTGCCATAGTCACGTGCCACCCAGACGTTGCCAAAGAGATTCTCAACAGCTCTGTCTTCGCTGATCGTCCTATCAAGGAATCCGCTTATAGTCTCATGTTCAACCGCGCCATCGGGTTCGCCCCTTACGGTGTTTACTGGCGAACCTTGAGAAAGATCGCCACCAAACACCTCTTCTCTCCCATGCAAATCAAGTCCTCGGAGATTCAGCGCTCCGAAATTGCCAACCAGATGGTCCACATGTTTAGAAACCGCCTTCCTGGCGGTTTCACCGTACGCGGGGTTCTCAAGAAAGCCTCGCTCAATAACATGATGTGGTCCGTGTTTGGACAGAGGTATAAGCTAAACGAGCCAAACAAGGGAATGGAGGAGCTGCGTGGGTTAGTGGAACAAGGGTATGACCTTTTGGGTACCCTTAATTGGGGTGACCACCTCCCTTTCCTTAAGGACTTTGACGCCCAAAAAATCCGGTCCACCTGCTCTATACTCGTTCCTAAAGTGAACCGGTTCGTCGGTTCAATCATCGCCGACCACCGAGCCGACAAAACCCAAACCAACCGGGATTTCGTTCATGTCTTGCTCTCTCTTCAAGAACCCGATAAATTGTCTGACCCCGACATGATTGCTGTACTCTGGGAAATGATATTTAGGGGGACCGACACCGTGGCGGTTTTGATCGAGTGGATACTAGCGAGGATGGTGCTTCATCCTGATGTGCAGAGGAAGGTGCAAGAGGAACTTGATGAGGTGGCTGGTGGAGGCTCACGCGCCTTCACGGAGGAGGATGTGGCGGCGACGGTGTACCTGCCGGCGGTGGTGAAGGAGGTTCTGAGGCTGCATCCACCGGGCCCACTTCTCTCGTGGGCCCGTTTGGCCATCACTGATACGACCATTGATGGGTATCACGTGCCCGCTGGGACCACGGCCATGGTTAATATGTGGGCCATAGCTAGGGACCCTGGGGTGTGGAGGGACCCACTTGAATTTATGCCTGAGAGGTTCATGGGAGGAGAAGGGGCTGACTTCTCAGTTTTCGGGTCGGATCTGAGGCTCGCTCCATTCGGGGCGGGTAGGAGGAGTTGCCCCGGGAAGACTCTTGGTTTGACCACCGTGACCTTCTGGGTGGCTAAGCTTTTGCACGAGTTTGAATGGCTACCGTCGGATGATGATGGGGTTGATCTAACGGAGGTGCTGAGGCTCTCTTGTGAAATGGCTAACCCTCTCACCGTTCAAGTGCGCCCCAGGCGTTAA 1596 0.5294 MTSHIDNLWVLALASKCTQENIAWSLLIMAILWLAMTFFYWSHPGGPAWGKYYSYSTWRKTSPSTTTSEIIIPGPKGYPLIGSMNLMSSLAHHRIAAAAKACNATRLMAFSLGDTRAIVTCHPDVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRKIATKHLFSPMQIKSSEIQRSEIANQMVHMFRNRLPGGFTVRGVLKKASLNNMMWSVFGQRYKLNEPNKGMEELRGLVEQGYDLLGTLNWGDHLPFLKDFDAQKIRSTCSILVPKVNRFVGSIIADHRADKTQTNRDFVHVLLSLQEPDKLSDPDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPDVQRKVQEELDEVAGGGSRAFTEEDVAATVYLPAVVKEVLRLHPPGPLLSWARLAITDTTIDGYHVPAGTTAMVNMWAIARDPGVWRDPLEFMPERFMGGEGADFSVFGSDLRLAPFGAGRRSCPGKTLGLTTVTFWVAKLLHEFEWLPSDDDGVDLTEVLRLSCEMANPLTVQVRPRR. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11496 531 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS E-class P450 group I signature 427 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Seca4g11496 531 FunFam Cytochrome P450 78A5 64 530 - -
Seca4g11496 531 PANTHER CYTOCHROME P450 78A7-RELATED 1 531 - -
Seca4g11496 531 CDD CYP78 105 523 - -
Seca4g11496 531 Pfam Cytochrome P450 73 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 SUPERFAMILY Cytochrome P450 72 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11496 531 Gene3D Cytochrome P450 66 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11496 Seca-Chr4 254282462 254284958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11496 1 531 Cytochrome P450 AT2G46660 66.853 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11496 K20619 - gmx:100798388 876.315