Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11490 ATGATTCCTTGCAACCCCATATTCCTTGTTATCTGCACGGCCCTCGTCTGTTTCATAATTCGATTGATGTTGTTCAAAACGGGGTTGATATACACCACCAAGAAACTCCATAGAAAGGTACAAGATTGGTTCCACGTGTACCAGTTCCTCAAAGTCCCCGAATTAAACGAAAGCATGCAACGGAATCAGCTCCACCGCAAGGTCTCCCTCTATTTGCATTCTCTTCCTTCAATTGAAGACTCTGACTTCACCAACCTCGTCACCGGGAACAACCAAAACGACATCGTTCTCACCCTCGACCCAAACCAAACCATCGAGGACCATTTTCTCGGGGCCACGCTCTTCTGGTTCAAACAAAAAACCGAACCGAACCGTTCCAGCGCCTTCGTCCTGAAAATCAGAAAAACCGATAAACGCAGAATTCTCCGCCCTTATCTCCGCCACATCCACGCCGTTTCCGACGAGATAGAGAACCAAGGGAAGCGCTATTTGCGGCTGTTCATGAACGTCGCTAGCGGCGGTGGCGGCAGTGGAACGCGGTGGAAATCCGTTCCGTTCAACCATCCGGCGACGTTCGAGACCATGGCGATGGAATTGGATCTCAAGAACAAGATAAAATCGGACCTCGAATTGTTCCTTAAGGCGAAGCAATACTACCGGCGGCTCGGCCGTGCGTGGAAACGGAGCTTCCTTTTGTACGGTCCCTCCGGCACTGGAAAATCGAGCTTTGTCGCCGCCATGGCTAATTTCCTCTGTTACGACGTGTACGACGTGGACCTCTCCAAGGTTCGCGGCGATTCGGATCTGAAGTTTCTCCTCCTCGAAACAACGGCGAAATCGATCATTGTCGTGGAGGATCTCGACCGGTTTCTGGCGGAGGAATCGCAATCGGCGTCGTTAACGGCATCGGGGATCCAGAACTTCATGGACGGGATTCTAAGCTCATGTTGCGGCGAAGAGAGGATCATGGTGTTCACGATGAACAGCAAGGAGTGTATCGACCCGAACCTGCTACGTCCGGGTCGGGTCGACGTTCACATTCATTTTCCGGTGTGCGATTTCTCGGCGTTCAAGACGCTGGCGAGTAGCTACCTTGGGGTGAAGGAGCACAAGCTGTTCCCGCAGGTGGAGGAGATATTCCGGCAGGGCGCGAGTCTCAGCCCCGCGGAGATCAGCGAGTTGATGATTGCGAATCGGAACTCGCCGAGTCGGGCCATCAAATCGGTTATCGGGGCGCTCCAAACGGACGGTGATGGGAGGGGGTGCGGGGATGTGATCGGACGGCAGATGGGAGATGATGACGTGGATGAAGGGCCCGAAGGGGTGCTGTGTGGTGGTGAGGGTTTCACTACGGTTAAGGATTTACGGAAGTTGTACGGTTTCTTCAGATTGCGGAACGCCAAAAGATCTCGCTCGTCTAATTGCTTGGTCAATGAAAGATGA 1443 0.5301 MIPCNPIFLVICTALVCFIIRLMLFKTGLIYTTKKLHRKVQDWFHVYQFLKVPELNESMQRNQLHRKVSLYLHSLPSIEDSDFTNLVTGNNQNDIVLTLDPNQTIEDHFLGATLFWFKQKTEPNRSSAFVLKIRKTDKRRILRPYLRHIHAVSDEIENQGKRYLRLFMNVASGGGGSGTRWKSVPFNHPATFETMAMELDLKNKIKSDLELFLKAKQYYRRLGRAWKRSFLLYGPSGTGKSSFVAAMANFLCYDVYDVDLSKVRGDSDLKFLLLETTAKSIIVVEDLDRFLAEESQSASLTASGIQNFMDGILSSCCGEERIMVFTMNSKECIDPNLLRPGRVDVHIHFPVCDFSAFKTLASSYLGVKEHKLFPQVEEIFRQGASLSPAEISELMIANRNSPSRAIKSVIGALQTDGDGRGCGDVIGRQMGDDDVDEGPEGVLCGGEGFTTVKDLRKLYGFFRLRNAKRSRSSNCLVNER. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11490 480 Pfam Domain associated at C-terminal with AAA 34 116 IPR025753 -
Seca4g11490 480 Gene3D - 181 351 IPR027417 -
Seca4g11490 480 SMART AAA_5 226 353 IPR003593 GO:0016887
Seca4g11490 480 PANTHER BCS1 AAA-TYPE ATPASE 43 414 - -
Seca4g11490 480 Pfam ATPase family associated with various cellular activities (AAA) 231 350 IPR003959 GO:0005524|GO:0016887
Seca4g11490 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 408 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11490 Seca-Chr4 254215082 254216524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11490 222 351 Calmodulin-binding Proteins AT3G56690 27.972 1.71e-06 48.9