Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11487 ATGATGGTTGTGGATGTGTTCACTTCTGGTCCTACCACAACTGCCATTTCTCAAATTATAGATACCATTGGTGAGTTCCTATATTATGCCAGTGATGTCCTTGTGAAGAAGGAGAGTTTTAAGGAACTTGCAGCTTACATGGAAAGAATTGTGCCCATCTTAAAAGAATTGAGGAAAGAAAAAGTCAGTGATTCTGAGACATTCAACCGTGCCATTGAGGTTATGAACGGTGAAATTAAAAATGCAAAGCTACTGGCTCAAGAATGCAGCAAGAAGAGCAAGGTTTATCTCCTAATGAATTGCAGGTCCATTGTTAAGCGCTTAGAAGACCACACAAAGGAGCTGAGCAAGGCTCTTGGTCTTCTTCCTTTAGCCACAGTAGGTCTTTCTTCAGGAATAATTGAAGAAATTGAAAAGCTATGTGACAATATGCAGGAAGCTGGGTTTAAGGCAGCTGTTGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTAATCGTTCCTATGCCAATAACTTACTGATTCTCATTGCAGAGGCTGTTGGGATTACAAATGAGAGGTCAGCAGTGAAGATGGAACTTGAAGAATTTAAGAAAGAAATTGAGAATGCCCGTATTAAGAAGGAATTGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCCTCATCACCTAGGGAAAGGGAACTCAAATACTTTGCCAAACGCCAATCTTTGGGTAATCAAATCTTGGAGCCTTTACAGTCATTTTATTGCCCCATCACCAAGGAGGTTATGGTGGACCCTGTAGAAACATCATCAGGGCAGACATTTGAAAGAAGTGCAATAGAGAAGTGGTTTGCTGAAGGAAATACTTTGTGTCCTCTGACCATGATTTCTTTAGATACCTCAATTTTGAGACCTAATAAAACTTTGAAACAATCTATAGAAGAATGGAAGGATAGAAATACAATGATTACAATTGCCACAGTAAAAGAAAAAATCCAGTCGGGAGACGATGGTGAAGTGCTGCATGGTCTGAGAACTATCCAGGATTTGTGTGAACAAAAAGACCAACACAAGGAATGGGTGATACTGGAGAATTATATACCAGTTCTTATCCAAATTCTTGGTTCAAGAAACCGTGATATTAGGAATCATGCTCTTGCCATCCTTTGCATGCTGGCAAAGGATAATGAAGAGGCTAAGGAAAGAATTGCAACCGTTGATAATGCAATTGAATCAATTGTTCATTCTCTTGGACGTCGTATAGGGGAAAGGAAGTTAGCAGTGACATTACTGCTTGAATTATCCAAATATGATTTAGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAGTGGGGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTAGAGAATCTTTCATGCTCTGATCAGAATGTTATTCAGATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAGATGATTATGGCCAGAACTTTAGCAGAGATGGAGTTAACCAACCACAATAAGGAGGCCTTGTTTGATGGTGGTGTACTGGCTCCTCTTCTTCACTTGTTCTCACATAATGATCTTCAGTTGAAAACAGTGGCCGTCAAGGCTCTTCGGAATCTATCCAGTTTAAAGAAAAATGGACTAGAAATGATTAGACAAGGGGCTGCACGACCATTACTTGACCTCCTTTTCCATCACAGCCTACCAACCTCAAGTTTGTGGGGAGATGTAGCAGCCATAACTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCCCAAACACCAGTTTTATTACTAGAATCTGATGATGATGTTTTTAACCTCTTTGGTTTAATTAGTGTCACACAGCCTGATGTGCAACAAAACATTATCCGGACCTTTTATACCTTGTGTCAGTCGCAGTCACACTCGGCTTCATATATCAGGACCAAGCTAAATGAGCAGTGCTCAGCTATACCAGAATTGGTTCGGTTGTGTGAGAATGAAAATCTAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGCCATCATACTGGAGAATGTTGATCAGAAATGCATCAATACTTTACTCCAGATCCTTAAATCTTCATCTGATGAAGAGGAACTACTTTCTGCGTTGGGAATAATATGCTATCTTCCAGAAAATCATCAGATAACTCAGTGGCTTCTGGATGCTGGTGCACTGCCAGTCATTTATAAGCATATCCAAGAAGGGAGAGACAGGGATCTTCAAAAGAGTAATTTAGTAGAAAATGCCACTGGTGCCCTATGTCGTTTTACAGTTCCAACAAACTTGGAGTGGCAAAAGAGTGCAGCTGAAACTGGGATTATAAATGTTTTAGTACAGTTGCTTGAAAGTGGAACCTCCTTGACAAAACAACGTGTGGCACAGTCTCTTGCTCAATTTTCTAGAAGTTCAGTTCGGCTCAGCAGGCCAATAGCCAATCGCAAAGGACTATGTTGCTTCTCAGCTCCAGCAGAAATTAGCTGTGGAGTTCATGGAGGAATATGCACAGTCAAATCATCATTTTGCCTTTTGGAGGCTGAAGCAGTGGGACCACTCACAAGGACTCTTGGGGAATCTGATTCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCACTCATAATAAGATTTCTTGGTTCTTCCTCCTCTAGGTTGCAAGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTAGGCAAGTGGAGTTCAAACAGAGGTATGGAGCCTCAGCTCAAATGCCCCTTGTTGACTTAACACAGCGGGGTAATGGTAGTGTTAGATCCATTTCAGCTAGAATATTGGCACACTTGAACGTGCTTCATGATCAATCTTCATATTTTTAA 3024 0.4071 MMVVDVFTSGPTTTAISQIIDTIGEFLYYASDVLVKKESFKELAAYMERIVPILKELRKEKVSDSETFNRAIEVMNGEIKNAKLLAQECSKKSKVYLLMNCRSIVKRLEDHTKELSKALGLLPLATVGLSSGIIEEIEKLCDNMQEAGFKAAVAEEEILEKIESGIRENNVNRSYANNLLILIAEAVGITNERSAVKMELEEFKKEIENARIKKELAEAMQMDQIIALLERADAASSPRERELKYFAKRQSLGNQILEPLQSFYCPITKEVMVDPVETSSGQTFERSAIEKWFAEGNTLCPLTMISLDTSILRPNKTLKQSIEEWKDRNTMITIATVKEKIQSGDDGEVLHGLRTIQDLCEQKDQHKEWVILENYIPVLIQILGSRNRDIRNHALAILCMLAKDNEEAKERIATVDNAIESIVHSLGRRIGERKLAVTLLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSCSDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMARTLAEMELTNHNKEALFDGGVLAPLLHLFSHNDLQLKTVAVKALRNLSSLKKNGLEMIRQGAARPLLDLLFHHSLPTSSLWGDVAAITMQLAASTISQDAQTPVLLLESDDDVFNLFGLISVTQPDVQQNIIRTFYTLCQSQSHSASYIRTKLNEQCSAIPELVRLCENENLNLRASAVKLFSCLVESCDEAIILENVDQKCINTLLQILKSSSDEEELLSALGIICYLPENHQITQWLLDAGALPVIYKHIQEGRDRDLQKSNLVENATGALCRFTVPTNLEWQKSAAETGIINVLVQLLESGTSLTKQRVAQSLAQFSRSSVRLSRPIANRKGLCCFSAPAEISCGVHGGICTVKSSFCLLEAEAVGPLTRTLGESDSGVCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIRFLGSSSSRLQEKSLHALERIFRQVEFKQRYGASAQMPLVDLTQRGNGSVRSISARILAHLNVLHDQSSYF. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11487 1007 Coils Coil 193 220 - -
Seca4g11487 1007 SUPERFAMILY RING/U-box 250 331 - -
Seca4g11487 1007 SMART arm_5 446 487 IPR000225 GO:0005515
Seca4g11487 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Seca4g11487 1007 SMART arm_5 363 403 IPR000225 GO:0005515
Seca4g11487 1007 SMART arm_5 529 569 IPR000225 GO:0005515
Seca4g11487 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Seca4g11487 1007 SMART arm_5 709 751 IPR000225 GO:0005515
Seca4g11487 1007 CDD RING-Ubox_PUB 263 312 IPR045210 -
Seca4g11487 1007 Gene3D - 13 127 IPR036537 GO:0007166
Seca4g11487 1007 Gene3D - 875 1005 IPR011989 -
Seca4g11487 1007 Pfam Armadillo/beta-catenin-like repeat 529 569 IPR000225 GO:0005515
Seca4g11487 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1007 - -
Seca4g11487 1007 SUPERFAMILY ARM repeat 333 781 IPR016024 -
Seca4g11487 1007 Gene3D - 632 857 IPR011989 -
Seca4g11487 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Seca4g11487 1007 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Seca4g11487 1007 SUPERFAMILY ARM repeat 786 997 IPR016024 -
Seca4g11487 1007 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Seca4g11487 1007 Gene3D - 337 631 IPR011989 -
Seca4g11487 1007 CDD MLKL_NTD 37 146 - -
Seca4g11487 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 336 IPR013083 -
Seca4g11487 1007 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11487 Seca-Chr4 254178245 254184021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11487 261 1007 U-box Gene Family AT1G76390 28.571 1.41e-65 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11487 - - psat:127076110 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11487 4 254178245 254184021 Seca4g11487 4 254178245 254184021 ECH