Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11486 ATGAAAGTTCCAATGGAGGAAAAGCCATTCCCTGCATGGTCATGGTCTGTGGAGCAGTGTTTGAAAGAGTATGGTGTGAGATTGGACAAGGGTTTGAGTACTTATGAGGTTCAGAAACGGCGTGAGAAATATGGTTGGAATGAGTTAGCAAAAGAGAAAGGGAAACCCTTGTGGGAATTAGTATTGGAACAATTTGATGACATATTGGTAAAGATACTTTTAGTTGCAGCCTTCATATCATTTCTTTTGGCTTATTTTCATGGAAGTGAATCAGGGGAGTCTGGATTTGAAGCTTATGTGGAGCCACTTGTGATTATTTTGATTTTAGTCCTTAATGCCATTGTTGGAGTTTGGCAAGAGAATAATGCTGAGAAGGCTCTTGAAGCTCTTAAAGAGTTGCAATGTGAATCTGGAAAAGTGTTAAGGGATGGCATTTTTGTGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATATTGTGGAGTTGCATGTTGGTGATAAAGTCCCTGCTGATATGAGAGTTGCAGCTTTGAAGACCTCAACATTGAGAATTGAACAAAGCTCATTAACAGGAGAAGCAATGCCTGTTCTCAAAGGGATCAATCCTATTTTCTTGGATGACTGTGAGTTGCAGGCCAAAGAAAATATGGTATTTGCAGGCACCACTGTTGTCAATGGGAGCTGTCTTTGTATTGTTATCACCACAGGAATGAACACTGAAATTGGAAAGATACAGAAACAAATACATGAGGCTTCTTTGGAAGACAGTGACACTCCCTTGAAGAAGAAGTTGGATGAGTTTGGTGGCAGGCTCACCACTGCAATTGGGATAGTTTGCCTTGTTGTGTGGGTTATAAACTACAAAAATTTCATTTCTTGGGATGTTGTGGATGGATGGCCTACAAACATCCAATTTTCTTTTAAAAAATGCACATACTATTTCAAAATTGCTGTTGCCCTTGCTGTGGCTGCAATTCCAGAAGGTCTTCCTGCTGTTATCACAACTTGTTTAGCACTTGGCACAAGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTGGAAACTTTGGGATGTACTACTGTGATATGTTCAGATAAAACTGGTACTCTTACAACAAATCAAATGTCTGTGACAGAGTTCTTTACTTTGGGAGGGAAAACCACTGCTTATCGAGTCATTAGTGTTGAAGGCACAACTTATGATCCCAAGGATGGGGGAATTGTTGATTGGACTTGCTATAACATGGATGCCAACTTGGTAGCCATGGCAGAAATATGTGCTGTTTGTAATGATGCTGGGGTTTATTTTGATGGTCGCCTATATAGAGCTACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGAGTTCCAGATGTGAAGTCAAGGAATAAAATTCGTGATGCACAAGTTGCTGCCAACAACATGATGGATTGTAACACTGTGAAGTTAGGCTGTTGTGAGTGGTGGAATAAAAGATCCAAGAGGGTGGCTACATTGGAGTTTGATCGCATTAGGAAGTCAATGAGTGTTATTGTTCGTGAACCAGATGGGGAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGCCTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGATCCCTGGTTCCAATAGATGATCAATGTAGAGAACTACTTCTTCAAAGACTGCAGGAGATGAGTTCAAAGGGATTACGTTGCTTGGGTTTGGCATACAAAGATGACTTGGGAGAATTTTCAGACTACTATGCAGACACTCATCCTGCCCACAAGAAATTGCTTGATCCAACATGCTACTCATCCATTGAAAGTGATTTAGTTTTTGTTGGTGTTGTTGGCTTAAGAGACCCTCCTCGGGAGGAAGTTCATAAAGCAATTGAGGATTGCAAAGAAGCTGGAATTAGGGTCATGGTAATAACTGGAGATAACAAGTCAACAGCTGAGGCTATTTGTAGGGAAATCAAATTGTTCTCTAGAGATGAGGACCTTACAGGGAAAAGTCTGACAGGTAAGGAATTCATGTCCCTTTCTCCTTCAGAGCAAGTTAAAATTTTGTCAAGACCTGGAGGCAAGGTTTTCTCTCGAGCTGAACCTAGACACAAGCAAGAAATTGTGAGACTACTCAAGGAAATGGGGGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCAGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGCATAACTGGAACAGAGGTTGCAAAAGAAGCATCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATTGTTTCAGCTGTTGCTGAGGGCCGTTCTATTTATAATAACATGAAAGCATTTATCAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCACTGGGGATCCCAGAATGCATGATACCAGTACAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCAGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAAAAGTGATGATGCTCTTATAAGTTACTGGGTTCTTTTCCGTTATTTAGTAAGTAATTGGATCCTATGTGGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACACAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGA 2700 0.4133 MKVPMEEKPFPAWSWSVEQCLKEYGVRLDKGLSTYEVQKRREKYGWNELAKEKGKPLWELVLEQFDDILVKILLVAAFISFLLAYFHGSESGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGIFVPDLPARELVPGDIVELHVGDKVPADMRVAALKTSTLRIEQSSLTGEAMPVLKGINPIFLDDCELQAKENMVFAGTTVVNGSCLCIVITTGMNTEIGKIQKQIHEASLEDSDTPLKKKLDEFGGRLTTAIGIVCLVVWVINYKNFISWDVVDGWPTNIQFSFKKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTAYRVISVEGTTYDPKDGGIVDWTCYNMDANLVAMAEICAVCNDAGVYFDGRLYRATGLPTEAALKVLVEKMGVPDVKSRNKIRDAQVAANNMMDCNTVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPDGENRLLVKGAVESLLERSSHVQLADGSLVPIDDQCRELLLQRLQEMSSKGLRCLGLAYKDDLGEFSDYYADTHPAHKKLLDPTCYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKEAGIRVMVITGDNKSTAEAICREIKLFSRDEDLTGKSLTGKEFMSLSPSEQVKILSRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISYWVLFRYLVSNWILCGNCNSWHFCLVVHTSIFSWHQSCE. 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11486 899 NCBIfam HAD-IC family P-type ATPase 305 389 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g11486 899 NCBIfam HAD-IC family P-type ATPase 703 815 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g11486 899 Gene3D - 30 252 - -
Seca4g11486 899 Pfam Cation transporting ATPase, C-terminus 815 870 IPR006068 -
Seca4g11486 899 PRINTS P-type cation-transporting ATPase superfamily signature 754 766 - -
Seca4g11486 899 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Seca4g11486 899 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Seca4g11486 899 PRINTS P-type cation-transporting ATPase superfamily signature 730 749 - -
Seca4g11486 899 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Seca4g11486 899 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Seca4g11486 899 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
Seca4g11486 899 Gene3D - 63 885 - -
Seca4g11486 899 FunFam Calcium-transporting ATPase, putative 217 364 - -
Seca4g11486 899 Pfam E1-E2 ATPase 134 348 - -
Seca4g11486 899 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 378 629 - -
Seca4g11486 899 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 892 IPR023298 -
Seca4g11486 899 SFLD Haloacid Dehalogenase 349 782 - -
Seca4g11486 899 PANTHER CALCIUM-TRANSPORTING ATPASE 19 876 - -
Seca4g11486 899 FunFam Calcium-transporting P-type ATPase, putative 624 775 - -
Seca4g11486 899 SUPERFAMILY Calcium ATPase, transduction domain A 140 248 IPR008250 -
Seca4g11486 899 Pfam haloacid dehalogenase-like hydrolase 365 744 - -
Seca4g11486 899 SUPERFAMILY HAD-like 366 834 IPR036412 -
Seca4g11486 899 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 626 IPR023299 GO:0000166
Seca4g11486 899 Gene3D - 378 629 IPR023299 GO:0000166
Seca4g11486 899 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Seca4g11486 899 Gene3D - 365 775 IPR023214 -
Seca4g11486 899 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 733 897 - -
Seca4g11486 899 FunFam Calcium-transporting ATPase, putative 115 250 - -
Seca4g11486 899 SFLD p-type atpase 349 782 IPR044492 -
Seca4g11486 899 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11486 Seca-Chr4 254169998 254175618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11486 6 869 Primary Pumps ATPases(2) AT4G00900 81.040 0.0 1432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11486 K01537 - gmx:100792952 1601.65