Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11480 ATGATTCACTCGTTCTTTCTATTTGTTTTTAATTTGACTCTTTTTCTCCTTTTGTTTTTGTCTCAGTACAATGAAATCTTGGGCAGGGGTGCCTTCAAGAATGTTTATAGGGGCTTTGATGAAGTTAATGGAATAGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTGGCAAAATTGTATTCAGAAGTCAATCTATTGAAGTCTTTGAAACATGAAAATATCATTAAGTTCTATAATTCCTGGATTGATGATAAGCAGAAAACTGTTAACATGATCACTGAACTCTTCACATCTGGAAATTTAAGGCAATACCGTAAGAAGCATAAATATGTTGAAGTGAAAGCCATAAAAGGTTGGGCCAGGCAGATTCTTCAAGGCTTAGTATATCTTCACAGTCACAGGCCACCTATTATTCACAGAGACTTGAAGTGCGACAACATATTTGTGAATGGAAACCAAGGAGAGGTTAAGATAGGAGACCTCGGTTTAGCAATTGTCATGCAACAACCAACTGCTCAAAGTGTTATTGGGACCCCTGAGTTTATGGCTCCAGAGCTATATGAAGAGGAATATAATGAACTTGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTCTTGAGTATCCCTACAGTGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCGGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGACCCCCAAATTAAAGAGTTCATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCCGCAGAGGAGCTTCTTAAAGACCCATTTCTACAAGTTGAGAATCCAAAGGATCCAAACTTTTATCCTTTACAGTCACCTATTAAAACTCCAAGAGCTACAAATATGTCCAAGTCTGGTTCTCCTTCTCTTTCCATGGACATAGATGCTGACTACAAACAGCTTTCTGTGAGTATCTGTGCTGAAAGCAACCAGGGAAGTCTACATTTTCCTGTTTTTGAAGTCCAAAGGAAGAATAAGAACAATGAGTTTAGGTTGAAAGGAACTAAAAATGATGATAACTCAATATCATTGACCTTGCGTATCGCTGATACATGTGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATTCAGATACTGCATTCTCTGTGGCCTCAGAGATGGTAGAACATTTGGAGCTGGCAGATCATGATGTGGCTTTCATAGCTGACCTTATTGATTACTTGATAATGAAACTTCTGCCTTGGTGGAAGCCCTCACCTGATCATAATACCAGTGGAGAATTAAGTCTTTATGGCGGGTCTACAAGTGTAGATAGCCAAACCTTAACGGTATGCCCTTGGGGTTCGTTCCTAACCAGTATTCCCTCTGAATCAGTAATTGGTCAAGATGGCTTCTCTGGGCTCAATACAATTCCTAAAGAAGGTTTTGTGACTGCTGAGAAGAGCTGTGATTTCGAAAATGCTGATAATACTATTTCTGAGGGTAATTATTATTCTTCTCCTAGTTTGGCTGGCTTGGAAGATCAGTTTTCACACGGATCTGGAGCTTCTGAGATAGCTGTTGAAGATGCTTCAATGAAAAATGAAAACTATCTTGATTCCAATGTTAATAGAAGTTTTAAATCCTTAAGTAGGTCCATATCAGAACTTGAACTTGGGGATGCATATTTTGAGGACTGTAAATTGCAGACAGAAGGTTGCTGTGCTGGGGAAGGCATTGTGATAAATGAATTCCCAAAGAACTCAGGGTCAATTCATGGAACATCTAATGGTGTGAGCTTATCAAGTACCTATTCTTCTCTGTCTTCAACAGAAAAGGACATTGATATTGAGCTAAAGCTTGAACTTGATGCAATTGAGTCACAGTATCAGCATTGGATTGAAGAACTTACTAGAATGAAGTTGGAGGCATTGGAAGCCACCAAAAGGAGATGGATGGCCAAGAAGAAAGTAGCTGTTCATTGA 1995 0.389 MIHSFFLFVFNLTLFLLLFLSQYNEILGRGAFKNVYRGFDEVNGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHENIIKFYNSWIDDKQKTVNMITELFTSGNLRQYRKKHKYVEVKAIKGWARQILQGLVYLHSHRPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQVENPKDPNFYPLQSPIKTPRATNMSKSGSPSLSMDIDADYKQLSVSICAESNQGSLHFPVFEVQRKNKNNEFRLKGTKNDDNSISLTLRIADTCGRVRNIHFLFYLDSDTAFSVASEMVEHLELADHDVAFIADLIDYLIMKLLPWWKPSPDHNTSGELSLYGGSTSVDSQTLTVCPWGSFLTSIPSESVIGQDGFSGLNTIPKEGFVTAEKSCDFENADNTISEGNYYSSPSLAGLEDQFSHGSGASEIAVEDASMKNENYLDSNVNRSFKSLSRSISELELGDAYFEDCKLQTEGCCAGEGIVINEFPKNSGSIHGTSNGVSLSSTYSSLSSTEKDIDIELKLELDAIESQYQHWIEELTRMKLEALEATKRRWMAKKKVAVH. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11480 664 ProSiteProfiles Protein kinase domain profile. 21 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11480 664 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11480 664 Gene3D Transferase(Phosphotransferase) domain 1 104 283 - -
Seca4g11480 664 Coils Coil 626 646 - -
Seca4g11480 664 FunFam Probable serine/threonine-protein kinase WNK1 19 102 - -
Seca4g11480 664 MobiDBLite consensus disorder prediction 289 309 - -
Seca4g11480 664 Gene3D - 361 434 - -
Seca4g11480 664 FunFam probable serine/threonine-protein kinase WNK9 104 283 - -
Seca4g11480 664 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 363 419 IPR024678 GO:0004674|GO:0005524
Seca4g11480 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Seca4g11480 664 SUPERFAMILY Protein kinase-like (PK-like) 24 321 IPR011009 -
Seca4g11480 664 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 22 644 - -
Seca4g11480 664 SMART serkin_6 21 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11480 664 MobiDBLite consensus disorder prediction 294 309 - -
Seca4g11480 664 CDD STKc_WNK 21 278 - -
Seca4g11480 664 Gene3D Phosphorylase Kinase; domain 1 19 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11480 Seca-Chr4 254114664 254118691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11480 522 664 MAP Kinase Kinase Kinase AT5G41990 27.778 1.03e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca4g11480 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11480 K08867 - gmx:100809602 966.066