Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11477 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGTTTGCACAAGGGTCCATGGACTCCTAGAGAAGATGCATTACTTACCAAATATATTCAAGCTCATGGAGAAGGCCAGTGGAAATCCCTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTGAGACCAGACATAAAGAGAGGGAACATAACAGCTGAAGAAGATGATCTTATCATTAGAATGCATTCACTTCTTGGAAACAGATGGTCCCTCATAGCTGGAAGATTACCAGGACGCACAGATAATGAAATTAAAAACTATTGGAATACCCATCTCAGTAAGAAGCTAAAAAATCATCATGATCCTGACTCAGAGAATAACGTAGCAGATCCAGAACAAGAGCCCAAGAAAAAGAAGAATAACAACGGTGAGAAGAGGAAAAAGAATAATAATAAGAAGCAGAAGCAGAAGCAGAACAAGAACAGAGGAGGAAATAATGCAGAGGAAGAGAAGACACAAGTGTATCTACCAAAACCCATTAGAGTTAAGGCTTTGTCTCTACCGAGAACGGATAGTGGTAATTCCTTCACAATGGAATCCAATTCATCAGCATGTGCATCAACGAGCCAAGAGAAAGAAGAAAGCCCAGGCCCAATAATAGATGACATGATTTATGACGTGGGAGAAAATGATGATTTTGGCATCTTTGGTGACGATCATGAACTAGTCAACCACATTGAATGCCAGTCTTATATTCCCACGGAACATGGTACTGGCACGCTAGAGAAACTCTATGAAGAGTGCTTGCAACTCTTGAACATGGACGATTGCCATTTCCAATTGGATTCCTTTGCTCAATCTTTATTGGAGGAATGA 876 0.4053 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKNHHDPDSENNVADPEQEPKKKKNNNGEKRKKNNNKKQKQKQNKNRGGNNAEEEKTQVYLPKPIRVKALSLPRTDSGNSFTMESNSSACASTSQEKEESPGPIIDDMIYDVGENDDFGIFGDDHELVNHIECQSYIPTEHGTGTLEKLYEECLQLLNMDDCHFQLDSFAQSLLEE. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11477 291 Gene3D - 71 116 - -
Seca4g11477 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g11477 291 MobiDBLite consensus disorder prediction 141 159 - -
Seca4g11477 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 209 - -
Seca4g11477 291 CDD SANT 16 61 IPR001005 -
Seca4g11477 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g11477 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca4g11477 291 Gene3D - 14 66 - -
Seca4g11477 291 MobiDBLite consensus disorder prediction 115 140 - -
Seca4g11477 291 SMART sant 13 63 IPR001005 -
Seca4g11477 291 SMART sant 66 114 IPR001005 -
Seca4g11477 291 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g11477 291 MobiDBLite consensus disorder prediction 187 219 - -
Seca4g11477 291 FunFam Myb transcription factor 11 67 - -
Seca4g11477 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g11477 291 FunFam MYB transcription factor 68 124 - -
Seca4g11477 291 MobiDBLite consensus disorder prediction 115 175 - -
Seca4g11477 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g11477 291 MobiDBLite consensus disorder prediction 188 214 - -
Seca4g11477 291 CDD SANT 71 112 IPR001005 -
Seca4g11477 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11477 Seca-Chr4 254050873 254052019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11477 4 134 MYB Transcription Factor Family AT3G13540 65.693 6.29e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g11477 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11477 K09422 - gmx:100803345 390.963