Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11467 ATGGCACATCTTGACTGTAATCTCACGGGCCCGGGGAGTTCTCAACCGGAAAAAGGTTTGAAAGATGACGATCTGTATAGAGAGCTATGGAGGTTGTGTGCAGGACCTTTGGTGGATGTTCCTCGTAGGGGAGACAGGGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATCCCCCATTTCAATCTTCCCTCTAAGATTTTTTGCCGTGTGGTGAACATTCAGTTGTTGGCGGAACAAGAAACTGATGAGGTTTATGCTTGTATCGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTGCAGATCCTGATCCAACTCCTTCTGAGACTCCAAAACAGAAATTTCACTCCTTTTGCAAGATATTAACTGCTTCTGATACCAGCACACATGGAGGATTTTCAGTTCTGCGGAAGCACGCCACTGAGTGCCTTCCCCCATTGGACATGAGCCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATATAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTTGCTGGAGATGCTTTTGTTTTCTTAAGGGGAGAGCATGGAGAATTGAGAGTTGGTGTTAGGCGTTTAGCTCGGCAGCAGAGTCCTATGCCTTCATCTGTTATATCAAGCCAGAGCATGCATCTTGGGGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTCATTGTTGGTTTGAACAAATATCTGGAAGCAGTCAACAATAAGTTCTCAGTTGGCATGCGTTTCAAAATGAGATTTGAGGGAGAGGACTCACCAGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTGTCTCCAGGATGGTCAAATTCTCAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCAGCAACTATTCCAAGGCCAGAGAGAGTTTCTTCTTGGGAGATAGAGCCTTTTATAGCCTCTCCTTCTCTGAATGTCACTCAACCAGTGCTGAAGGGCAAAAGATCTAGGCCAGCTGATGTTTCATCTTCTGCTGCTTCAGGTTTCTGGTATAATGGATCATCCCAGGCTCATGAGCTTACCCAATTAGGTGGTGCTGCTGAAGTCCAAAGCAAAGAAAATCAGGTTGTATGCTCTCTGAGGCAGAAGGACATTAATAGCAACCCCATTAATACCAACTCCATCAGCTCTAGAGTCCGGGTGGAAGGAATATGGCCTTCTTCCCCACATTTGAATATAACTCCTAACCTTTATTCTGATCCCAAAAACAACAAAGGGGTTGCAGAACAATCACCTATCTCTGGTTATCCTACTGTTTCATCTAGACCAAGTGATGGCCCCCCACGTGATAGGGTGGTAGATGGGAAAAAGAGTGAGAATTCCTTAGATTGCTGGTTATTTGGAGTTAATTTGACTAACAACTCTAGCAATGTTATTACTCCTTCAGAGAAAGAAGTGGGGTGCCCATGTCCAACTATTGTTCCTAGTGGTCCCAAAGAATCTATGCCTGCTGCTGTTGCATGTGAAACTGAGAGGGTTCAGACCCCCAACAAGGGGCAGAAGCAAATTATTTCTGATACATCACCTAATGAATGGCAGAACAAGCAGGCCAGTGTACCATCCATGAGGACGCGGACTAAGAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAATTGACTTGACCATGTTGAGTGGCTATGATGATCTCAGAGATGAACTTGAGAAATTGTTTGATATTAAAGGAGAGCTGCGTTTACAAGACAAATGGGCAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTGGGTGATGATCCATGGCTGGAGTTTTGCAACATAGTGAAGAGGATTTTGATTTGTTCAAGGGAGGACTTGAAGAAGATAAAATGCAAGGTACCTGCTGCTTCATCAGAGGTTGAAGAGACACTATTGAGCCCAGATTCACAGAATAGGGATGAGACTCAACAATCTCACATGCCTTGA 2112 0.4479 MAHLDCNLTGPGSSQPEKGLKDDDLYRELWRLCAGPLVDVPRRGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKIFCRVVNIQLLAEQETDEVYACIALLPESDQTEPADPDPTPSETPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSPGWSNSQWRSLKVQWDEPATIPRPERVSSWEIEPFIASPSLNVTQPVLKGKRSRPADVSSSAASGFWYNGSSQAHELTQLGGAAEVQSKENQVVCSLRQKDINSNPINTNSISSRVRVEGIWPSSPHLNITPNLYSDPKNNKGVAEQSPISGYPTVSSRPSDGPPRDRVVDGKKSENSLDCWLFGVNLTNNSSNVITPSEKEVGCPCPTIVPSGPKESMPAAVACETERVQTPNKGQKQIISDTSPNEWQNKQASVPSMRTRTKKVQMQGVAVGRAIDLTMLSGYDDLRDELEKLFDIKGELRLQDKWAVTFTDNENDMMLVGDDPWLEFCNIVKRILICSREDLKKIKCKVPAASSEVEETLLSPDSQNRDETQQSHMP. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11467 703 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g11467 703 SUPERFAMILY CAD & PB1 domains 587 660 - -
Seca4g11467 703 Coils Coil 608 628 - -
Seca4g11467 703 Gene3D - 581 672 - -
Seca4g11467 703 FunFam Auxin response factor 291 362 - -
Seca4g11467 703 Gene3D - 291 363 - -
Seca4g11467 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g11467 703 ProSiteProfiles PB1 domain profile. 584 665 IPR000270 GO:0005515
Seca4g11467 703 SUPERFAMILY DNA-binding pseudobarrel domain 120 259 IPR015300 -
Seca4g11467 703 Gene3D - 127 231 IPR015300 -
Seca4g11467 703 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Seca4g11467 703 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Seca4g11467 703 CDD B3_DNA 128 230 IPR003340 GO:0003677
Seca4g11467 703 MobiDBLite consensus disorder prediction 684 703 - -
Seca4g11467 703 MobiDBLite consensus disorder prediction 678 703 - -
Seca4g11467 703 MobiDBLite consensus disorder prediction 450 481 - -
Seca4g11467 703 Pfam AUX/IAA family 630 667 IPR033389 -
Seca4g11467 703 Pfam AUX/IAA family 573 620 IPR033389 -
Seca4g11467 703 SMART B3_2 130 232 IPR003340 GO:0003677
Seca4g11467 703 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g11467 703 MobiDBLite consensus disorder prediction 450 496 - -
Seca4g11467 703 FunFam Auxin response factor 128 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11467 Seca-Chr4 253919744 253924193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11467 25 671 B3 DNA Binding Superfamily AT4G23980 55.793 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g11467 B3 3.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11467 K14486 - gmx:100790981 1192.95