Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11464 ATGGAGCAACATTTGCATTGCGCCGCCGAAGATGACGTGGCAGTATCATCCACTACCACTAGCTCAGCCGTGAAATCCGGCAACGAACGAGGCGGCACGCGCCACCCTGTCTACCGCGGCGTCCGGAAGCGGCGATGGGGAAAATGGGTTTCGGAAATTCGGGAGCCTCGCAAGAAGTCGCGCATATGGCTTGGGTCTTTTCCGGCGCCGGAGATGGCAGCGAAGGCTTACGACGTCGCCGCCTACTGTCTCAAGGGCAGAAAGGCGCAGCTCAATTTCCCCGACGAGGTGCACCACCTTCCGCCGCTTCCTCCGCCGTCCGCCTGCACCGCCAGGGACATTCAGGAGGCGGCGGCTAAGGCGGCTCGCATGATGGTCAAGGCCGCTGCCGTCGACTCGCCGGAGAAGAGCAGCATTGGTTCCGATGGCGACAGCGGCGGCGATGATTTTTGGGGCGAGATAGAGCTGCCGGAGCTCATGAACAGCACGTGGTGGACTTCCTCCGGTGACATCACGCCGTGGACGGAGGTTGAGCTTCCGCCGCAGCAACCATTCACGGCGTGCCTATAG 570 0.6228 MEQHLHCAAEDDVAVSSTTTSSAVKSGNERGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHHLPPLPPPSACTARDIQEAAAKAARMMVKAAAVDSPEKSSIGSDGDSGGDDFWGEIELPELMNSTWWTSSGDITPWTEVELPPQQPFTACL. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11464 189 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Seca4g11464 189 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Seca4g11464 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 161 - -
Seca4g11464 189 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Seca4g11464 189 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Seca4g11464 189 MobiDBLite consensus disorder prediction 13 28 - -
Seca4g11464 189 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Seca4g11464 189 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Seca4g11464 189 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Seca4g11464 189 MobiDBLite consensus disorder prediction 130 152 - -
Seca4g11464 189 CDD AP2 38 95 IPR001471 GO:0003700|GO:0006355
Seca4g11464 189 MobiDBLite consensus disorder prediction 1 35 - -
Seca4g11464 189 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11464 Seca-Chr4 253834120 253834689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11464 18 189 AP2-EREBP Transcription Factor Family AT1G01250 57.297 1.21e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g11464 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11464 K09286 - gmx:100802845 258.84