Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11463 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGTTGCAAACGGGACCATGGACTCCTAGAGAAGATGCATCGCTTATCAAATATATTCAAGCTTATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGGTGAACTATTTGAGACCAGACATAAAGAGAGGGAACATAACAGCTGAAGAAGATGATCTTATCATCAGAATGCATTCACTTCTTGGAAACAGATGGTCCCTCATAGCTGGAAGACTCCCAGGACGCACAGATAATGAAATTAAGAACTATTGGAATACCCATCTCAGTAAGAAGCTCAAAAATAATCAAGACCCTAACCTACCTGCAGATCCTGATCAACAAGAAGCTGCTGCATGCAGTGCCAAGAAAAAGAAGAACAATAATAATAACAAGAAGCAGAAGCAGGAGAAGAACAAATTAAAGGCAAATAATGCAGAGGCACCGAAGATCCAAGTTTATATGCCAAAACCCATTAGGCTTAAGGCTTTGTCATCTAATTTACCGAGAACGGATAACGGCTGCTCCTTGAGTACCGTTGATATTCTCAATTCGTCAAGTTGTGCATCAACAACAAACCTAGAAAATCAAGAGGGAAGAAAAGAAGAAGAAGAAGAAGTAATGGTAAATAATGTGGTATGGGAAGATGGTGAGCAGCATGAGGTAGTAAATGATATATTAAACATAGAATGGGAGTTATGCCATGTCCCCACAGCCACTGAGCATGGCACGTTAGAGAAATTGTATGAAGAGTACTTGCACCTCTTGACCATGGACGACAGCAGCCAATTCCAATTTCAAGATTCTTTATTGGGGTGA 867 0.4083 MGRAPCCSKVGLQTGPWTPREDASLIKYIQAYGEGQWKSLPKKAGLLRCGKSCRLRWVNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKNNQDPNLPADPDQQEAAACSAKKKKNNNNNKKQKQEKNKLKANNAEAPKIQVYMPKPIRLKALSSNLPRTDNGCSLSTVDILNSSSCASTTNLENQEGRKEEEEEVMVNNVVWEDGEQHEVVNDILNIEWELCHVPTATEHGTLEKLYEEYLHLLTMDDSSQFQFQDSLLG. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11463 288 Gene3D - 14 66 - -
Seca4g11463 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g11463 288 CDD SANT 16 61 IPR001005 -
Seca4g11463 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g11463 288 Gene3D - 71 116 - -
Seca4g11463 288 FunFam MYB-related transcription factor 13 66 - -
Seca4g11463 288 Coils Coil 140 160 - -
Seca4g11463 288 FunFam MYB transcription factor 68 124 - -
Seca4g11463 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g11463 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g11463 288 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca4g11463 288 CDD SANT 71 112 IPR001005 -
Seca4g11463 288 MobiDBLite consensus disorder prediction 115 161 - -
Seca4g11463 288 SMART sant 13 63 IPR001005 -
Seca4g11463 288 SMART sant 66 114 IPR001005 -
Seca4g11463 288 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca4g11463 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g11463 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11463 Seca-Chr4 253808032 253809411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11463 1 170 MYB Transcription Factor Family AT4G38620 55.294 6.02e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g11463 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11463 K09422 - gmx:778044 286.189