Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11462 ATGCGCACACAAAATTCAGTCGCTCAGAGATTCATAACTGTGAGTCACATGGTTTACAGTAACAGACTGGTAGATAGAAATAGAATAGATATCATAGGAGCAAACAACCAAACAAAAGCATCATCTTCTTGGACTACCTCTCAACTTCCAACCAGGCCTTTATTTAAGGCTTTGGGTTTGTGTTCCTTCTATAGAAAGTTGAGATTTTTCTTGGTTTTGCCTTGTGGGGTTGGGTTTTGTTTTGTTTTAGAGATGAAGATTGAGATGGGGTTAGGAGGAGGTGGGGGGTTGTGGAATGAAGATGAAAAGGCCATGGTAGTGGAGGTTCTTGGCGCTACAGCTTTTGATTACTTGATTGCTAACTCTGTCTCGAATGAGAATCTGTTAATGGCAATTGGAAGTGGTGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGCCCCAACGTGTCCAACTTCAGCTGGAACTATGCAATCTTCTGGCAAATTTCACAGTCCAAATATGGGGATTGGGTTCTGGGCTGGGGAGATGGGTGTTGCAGGGAGCCAAGGGAAGAAGAAGAAGGTGGAGTCAGAGGGGTTCTCAGCCTTAACCTTGATGATGAAAAGCAACAGAGGATGAGGAAGAAGGTGCTGCAGAAGCTGCACACAACATTTGGGGGTTCAGATGAGGACAATTATGCTTTTGGACTGGACCGAGTCACAGACACAGAAATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCTCCTGGCCATGGTGGACCAGGTAAGTGCTTTGCATCAGGTAAGCACTTGTGGCTTTCTGATGCTTTGAAACCTACTTCTGATGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTATTGTTTTAGTCCCTACTGATATTGGTGTGGTGGAGATGGGTTCTGTCAGAACAGTGGAGGAGAGCTTTAAATTGTTGAAGGTTGTTAAATCTGTGTTCTCAGCACATTCATCATTTCACAGGTCTAATGAGAACGCCCCTTTTTCTAGTTTGGCAATTGGGGATAATAATAGTAATAGTAATAGTAATAGTACAAATAACCATAATTACCATAATAGAGTAGAGGGAACTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAATCCTGTGACCCCTTTTAGGGAGAAACTTGCTATCAGGAAAATGGAGGAGAGGCCATGGGGAGGAGGTCATCCTAATGGGAAGAGCATTGGCATTCCAAATGGTATTCATGGTTCTAGTTGGGGAGCTACTCAAGTTGTGAGGCAGCCTGAACTTTTTGCTCCTAGGCCCACCACAAGCAATGTGCCTGAGCTAGCCAATGGTGCAAGGCGTGATTTCCTACTTAACAACTATCAACAACAGCGGCAGATGCAGCATATGCAAATTGATTTCTCAGGAGCCACATCAAGGCCTTCTGTGAGATCAATCATTCCTGAACCTGAGCTTTCTGAAGTTGAAGGCACATGTAAGGAGGAGAGACCAAGTGCCACTGATGATAGAAGGCCAAGGAAACGGGGCAGAAAGCCAGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGTTTCTATGCCTTAAGATCTGTTGTGCCAAATATCTCCAAGATGGACAAGGCATCTCTGTTGGGAGATGCTATTTCTTACATCAATGAGCTTCAGGTAAAACTCAGGATGCTGGAGTCTGAAAGAGAGAGATTTGGAAGCACCTCTAGAGATGGATCAGCATTGCAGGCCAACTCAGGAGCAGAAAACCATCAGCATAGAGCTCCTCCTGATGTGGATATTCAAGCTTCACAAGATGGTGTCATTGTAAAGGTGAGCTGTCCCATTGATGTTCACCCTATTGGAAAAGCCATCCAAGCTTTCAAAGAGGTAGAGGTCAATGTTTTAGAGTCAAAACTCACTGCTGCAAATGATACTGTAATGCACACATTTGTAATCAAATCCCAGGGACCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCCCAGAATCCAACTCCTTAAAGCCATTACCATCTGTTGGGTAG 2094 0.446 MRTQNSVAQRFITVSHMVYSNRLVDRNRIDIIGANNQTKASSSWTTSQLPTRPLFKALGLCSFYRKLRFFLVLPCGVGFCFVLEMKIEMGLGGGGGLWNEDEKAMVVEVLGATAFDYLIANSVSNENLLMAIGSGENLQNKLSDLVERPNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPREEEEGGVRGVLSLNLDDEKQQRMRKKVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPPGHGGPGKCFASGKHLWLSDALKPTSDDYCVRSFLAKSAGIQTIVLVPTDIGVVEMGSVRTVEESFKLLKVVKSVFSAHSSFHRSNENAPFSSLAIGDNNSNSNSNSTNNHNYHNRVEGTGVPKIFGQDLNPVTPFREKLAIRKMEERPWGGGHPNGKSIGIPNGIHGSSWGATQVVRQPELFAPRPTTSNVPELANGARRDFLLNNYQQQRQMQHMQIDFSGATSRPSVRSIIPEPELSEVEGTCKEERPSATDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYINELQVKLRMLESERERFGSTSRDGSALQANSGAENHQHRAPPDVDIQASQDGVIVKVSCPIDVHPIGKAIQAFKEVEVNVLESKLTAANDTVMHTFVIKSQGPEQLTKEKLIAAFSPESNSLKPLPSVG. 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11462 697 Pfam Helix-loop-helix DNA-binding domain 526 572 IPR011598 GO:0046983
Seca4g11462 697 MobiDBLite consensus disorder prediction 492 533 - -
Seca4g11462 697 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 138 327 IPR025610 -
Seca4g11462 697 Coils Coil 568 588 - -
Seca4g11462 697 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 525 585 IPR036638 GO:0046983
Seca4g11462 697 MobiDBLite consensus disorder prediction 342 367 - -
Seca4g11462 697 MobiDBLite consensus disorder prediction 584 611 - -
Seca4g11462 697 PANTHER MYC 125 682 IPR045084 GO:0003700|GO:0006355
Seca4g11462 697 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 522 571 IPR011598 GO:0046983
Seca4g11462 697 MobiDBLite consensus disorder prediction 474 533 - -
Seca4g11462 697 Gene3D - 515 587 IPR036638 GO:0046983
Seca4g11462 697 MobiDBLite consensus disorder prediction 342 368 - -
Seca4g11462 697 FunFam Transcription factor bHLH13 515 589 - -
Seca4g11462 697 CDD bHLH_AtAIB_like 519 584 - -
Seca4g11462 697 SMART finulus 528 577 IPR011598 GO:0046983
Seca4g11462 697 MobiDBLite consensus disorder prediction 589 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11462 Seca-Chr4 253739632 253742453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11462 94 697 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.571 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g11462 bHLH-MYC_N 2.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11462 - - gmx:100807078 819.305