Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11447 ATGATAATTAAGCGGACGAAGAAAATTGAAATGCCGAAACTGAAACGGTGTAAACTGGAGGAGCCCGATTCCGAAGGCTATGATGGGCGTTCAGCGATTCAGAAGAAGCGCAAGGTGAATGGGTTTTACTCTTTGGCTATGCCAGGTGATGCTGAAGATTTCAGCAGTGGTTCTGGTTCTTGGAGCAGTGAAGGTTCGCATTGGGGTGGTGGTGGGGGTGAGGTTCAGTCCAATTCAAATTCTGCGCCATTGGATGGTAAAACAGCGAAACACTGGGGCTCTGAAGGGCCTAGGCCTCCCTTGTTGCGGTCCTCACGTGGCCGCCTTCAGATGCTTCCGTCCAGGTTCAGTGACTCGGTTCTTGATTCATGGAAGAATCGAGGAATGAAAACAGAGGACGGAGACTCCAGCTTTGAGGATGATAAGAGTTTTGTAGAAGATGATAGGGCTGGTATTAGTGCTGAGGGATTTGTAAAACTTGAGAAGAGTGATAGCCATGGATTGAAAAATTCTGTGTGTTATCCGTGTCCTGAAGTGAAGGTTGATAAAAGGGAGCATGCTGATTCGTCTAGTGTTGGTAGAAAGACTGTGAAGACTGAGAGTAACACGTCTGGTCTTAGTTTTGAAGGTGTGGACCAAAAGCCTAATGAGAATGCTGAAAAGAGGAAAGAGATTTACAAGCCAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCTAAATGTGGGAAGAGATATCCGGCGTGGCCTGCTGTGGTGATTGATCCCATCTTGGATGCCCCCAAATCCGTCCTGAGCTGTTGTGTTCCCGGTGCACTTTGCGTGATGTTTTATGGTTATTCAAAAAATGGAACGCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGATTTTTCCCTTCCAGGAATTTATGGAAAGATTCCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCACTGGAGGAGGCAATGTTGGCAGAAGATGGTATTCTGGAATCACAGTTGGGAGGAGCAGAGGAAGTAACTAATTTAAAAGCTCGTCCTGATGGACTTATAGAGGCCATGGGTTCATGTGTTGATCAGGAATATTACTGCCAGGATCCGGAATATATTGTGCAGGATGCAAGATATTGTGCTGGCTGTGGTTTGTTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTATGCACCTCAATTTTATTGCAAACATTGTGCCAAGCTACGAAAATCTAAACAATATTGTGGCATTTGCAAAAAGATTTGGCATCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCACCAAACTTTTCAAGGATCTGGAAAATACAGATTATTATTGTCCAGATTGCAAAGGAAAGTTAAATTGTAAATTAGCATCACAAACATATAAGTCAAAAACCAAACCAGTAGAGAATTGCCAAAAACCTGTGGTACCTGATAAGGTACTGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAATCTTCATTTAGTTATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTGAGTGAATGGGAAAAGCATACAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCTCAATGATAACACTAGAAAAATGGATCACAGAGCACATTTCACAAGATGGAGTTCCTCAGCAGTTAGATCAGCAGCAGGTGCTTGCCTTTCTGCAAGAGAAGTATGAGCCAGTTCATGTAAAATGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGTAACAGATGCCAAATTGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGCGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTAACTTGCGCTTGGTTTCGACCTGAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCCTCAGGAATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATTTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCGAGAGCAGGATATACCATGGAATTGCATTCTATGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATTTTGTGCAGTTCACAGAGTCCCAAGTCCAGATTCAGTACTGGTTGCACATACACCCCTGGGGATTTTCTCTCCCAGAACATCACTTCAAAATCGTAAGGGATGCTTCAGGGGATCAAGGCTGGTTTCATCAAAGAATGTTGAGCTTAATGAATCTTCAACCACTGAAAATGACTGCATTGAACCACTATCTGCTGCCAGATGTCGTGTGTACCAGAGGTCTCCTAATAAGAGGGCGGATGTGCCAATAATTCACTTGCTGAGGGGGCCCAGCCTTCATTCTTTAGGTGCAATAACTCAGTTGAACAGCTATAAGGATGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATTTACAGAAAATGGAAAGACTTAGTGTTTGCTTTGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGTAGAGATGTACAAGAAGGAGAGATGGTTGTTGAGTATAGAGGTGAGCAGGTAAGGCGCAGTGTTGCTGATATGAGGGAAGCAAAATACCGTTCAGAAGGCAAAGATTGCTATCTGTTCAAGATCAGTGAGGAAGTGGTAATAGATGCAACACACAAGGGCAATATAGCACGTTTGATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGCTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAAACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 3105 0.4325 MIIKRTKKIEMPKLKRCKLEEPDSEGYDGRSAIQKKRKVNGFYSLAMPGDAEDFSSGSGSWSSEGSHWGGGGGEVQSNSNSAPLDGKTAKHWGSEGPRPPLLRSSRGRLQMLPSRFSDSVLDSWKNRGMKTEDGDSSFEDDKSFVEDDRAGISAEGFVKLEKSDSHGLKNSVCYPCPEVKVDKREHADSSSVGRKTVKTESNTSGLSFEGVDQKPNENAEKRKEIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILDAPKSVLSCCVPGALCVMFYGYSKNGTQRDYAWVKQGMIFPFQEFMERFQGQTRLYKSKPSDFRMALEEAMLAEDGILESQLGGAEEVTNLKARPDGLIEAMGSCVDQEYYCQDPEYIVQDARYCAGCGLLLPCKTMKKIKDSSYAPQFYCKHCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISTKLFKDLENTDYYCPDCKGKLNCKLASQTYKSKTKPVENCQKPVVPDKVLVVCNGMEGIYIPNLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSSMITLEKWITEHISQDGVPQQLDQQQVLAFLQEKYEPVHVKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVVFQNHEAMEPASGILRIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIFCAVHRVPSPDSVLVAHTPLGIFSPRTSLQNRKGCFRGSRLVSSKNVELNESSTTENDCIEPLSAARCRVYQRSPNKRADVPIIHLLRGPSLHSLGAITQLNSYKDEDSKVFTSFKERLHHLQKMERLSVCFGKSGIHGWGLFARRDVQEGEMVVEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN. 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11447 1034 FunFam Histone-lysine N-methyltransferase 653 772 - -
Seca4g11447 1034 CDD PWWP_AtATX3-like 234 333 - -
Seca4g11447 1034 ProSiteProfiles Post-SET domain profile. 1018 1034 IPR003616 -
Seca4g11447 1034 SMART PostSET_3 1018 1034 IPR003616 -
Seca4g11447 1034 MobiDBLite consensus disorder prediction 194 211 - -
Seca4g11447 1034 FunFam Histone-lysine N-methyltransferase 866 1034 - -
Seca4g11447 1034 Pfam PHD-finger 616 650 - -
Seca4g11447 1034 ProSiteProfiles PWWP domain profile. 233 302 IPR000313 -
Seca4g11447 1034 CDD PHD_ATX3_4_5_like 603 649 IPR042011 -
Seca4g11447 1034 ProSiteProfiles Zinc finger PHD-type profile. 601 652 IPR019787 -
Seca4g11447 1034 CDD PHD_TCF19_like 421 471 - -
Seca4g11447 1034 ProSitePatterns Zinc finger PHD-type signature. 604 649 IPR019786 -
Seca4g11447 1034 Gene3D - 220 336 - -
Seca4g11447 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 477 IPR013083 -
Seca4g11447 1034 SMART PWWP_4 231 300 IPR000313 -
Seca4g11447 1034 PANTHER PHD FINGER PROTEINS 12 472 - -
Seca4g11447 1034 SUPERFAMILY FYVE/PHD zinc finger 601 666 IPR011011 -
Seca4g11447 1034 ProSiteProfiles SET domain profile. 892 1009 IPR001214 GO:0005515
Seca4g11447 1034 Pfam SET domain 903 1008 IPR001214 GO:0005515
Seca4g11447 1034 Gene3D SET domain 806 1034 IPR046341 -
Seca4g11447 1034 Pfam PWWP domain 234 330 IPR000313 -
Seca4g11447 1034 SMART PHD_3 420 472 IPR001965 -
Seca4g11447 1034 SMART PHD_3 603 650 IPR001965 -
Seca4g11447 1034 SMART PHD_3 714 770 IPR001965 -
Seca4g11447 1034 MobiDBLite consensus disorder prediction 184 222 - -
Seca4g11447 1034 Pfam PHD-zinc-finger like domain 657 769 - -
Seca4g11447 1034 SUPERFAMILY Tudor/PWWP/MBT 224 334 - -
Seca4g11447 1034 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1034 IPR025780 -
Seca4g11447 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 652 IPR013083 -
Seca4g11447 1034 CDD SET_SETD1-like 881 1030 - -
Seca4g11447 1034 ProSiteProfiles Zinc finger PHD-type profile. 418 474 IPR019787 -
Seca4g11447 1034 SUPERFAMILY FYVE/PHD zinc finger 418 479 IPR011011 -
Seca4g11447 1034 MobiDBLite consensus disorder prediction 52 110 - -
Seca4g11447 1034 Pfam PHD-finger 420 473 IPR019787 -
Seca4g11447 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 771 IPR013083 -
Seca4g11447 1034 ProSiteProfiles Extended PHD (ePHD) domain profile. 655 770 IPR034732 -
Seca4g11447 1034 SUPERFAMILY SET domain 886 1031 IPR046341 -
Seca4g11447 1034 SMART set_7 892 1015 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11447 Seca-Chr4 253563305 253572641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11447 604 769 C2H2 Transcription Factor Family AT3G14740 33.714 5.44e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g11447 zf-HC5HC2H_2 3e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11447 - - gmx:100797346 1694.48