Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11445 ATGGGCATCTTGATCTTGAAGCTCCTTTTTCACTTCTTCATCTTTCCTGTCATATATGCCTGGAATGATTGCCAATTTTCTTTATGTGGTAACAATAGTATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTGGGCAACGTCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTACTAATGATAGCAAAACAGTTCTAAAACTTCCATACTCTGGAGAATTCTATGTACGCAACATAAACTATCTCACCCAACAGATACGAGTCTACGACCCCGCTGATTGCCTTCCCAGACGTCTTCTAAGCCTCAATTTTTCAAGTTCTCCCTTCACTACCACTTTTAGTCGTAACTACACCTTCTTAAGCTGCTCTCAGAACGCAGGGTCACAATTCATTCCCATTGACTGCCTCAGTAATTCCACAAATTTTGTATATGTCATCCCTTCAGTGAACATGGCCGATTCGTTGCCCGTGTCTTGCTATGTTATTAAAAGGCTTTCAGTTCCAGTTGCAATGCCAGGACGGTATGAGGAAAATCTCACAGATGTCCTTAGTGAAGATCTTCGATTAACATGGGATAAACCTGTCTGCCGATATTGCGAATCACAAGAGCTAATGTGTGGATTTGAGAGCAGTAACAGCAATCGAGTTACCTGTTTATCTGATTTCCAAACAGATGATTCGCAACAAGGACTACGAGTTTTTAGAATCATCGCATTATGCATTAGTGGACCAGCTGCAGTGTTTGTTATTTTGATGGCAAGCTGTGTGTGCTACAATGACAGAATAACCAATGCTACAAGAAATGCAGCTTCCCTGAGGTCAGCACCAGCTGCAATATTACCAGAACCAACCATTGTGACTGTGGGTCTGGATGAGTCTACAATTGAATCATATGAGAAGGTGGTACTAGGGGAGAGTCGACGAGTGCCTGGACCCAATGGTGGATGTTGCTGGATATGTTTGTCAGAGTACAACAGCAAAGAGACAATCAGATGCATTCCTGAATGCAACCACTGTTTCCATGCTGACTGCATAGATGAATGGCTTCGCATGAACAACACATGCCCTGTCCTTTTTCACTTGTTCATCTTTCAAGTCATATATGCCACAAATGATTGCCAATTTTCTTTATGTGGTATCAATAGTATCCTTATTCGTTTCCCCTTTCGGCTAGAAGGTGTGCAACATAGTTATTGTGGCTATCCTGGTTTCAACTTAGTTTGTACAAATGATAGCAAAACAGTTATAAAATTTCCATACTCTGGAGAATTCTATGTGCGCAACATAAACTATCTCACACAACAGATACAAGTCTATGACTCTCATGATTGCCTTCCCAAACGTCTTCTGAGCCTCAATCTTTCAGGTTCTCCCTTCACTCCCACTTTTAGTCGTAACTACACCTTCATAAGCTGCCCATCTCAGAATGAAGGGTCACAATTCATTCCCATTGAGTGCCTCAGTAATTCAACAAGTTTTGTATATGCCATCCCTTCAGTGAACATGGCCTATTCACTACCTGATTCTTGCTATGTTATTAAAAGGCTTTCAAGTCCAGTTGCAAGGCCAGGATGGTATGAGGAAAATCTCAGAGATGACCTTAGTGATGAACTTAGATTAATGTGGGATAAACCTTACTGCAGATATTGTGAAGCACAGAGGCTAATGTGTGGATTTGAGAGCAATAGCAGCAATAGAGTTATCTGTTTATCTGATTACCAAGCAGGTAATGCGAAACGTGGACATCGAGCTTTTAGAATCATCACATTATCCATTGTTGTACCAGCTGCCATATTTATGATTTTAATTGCAAGCTCTGTGTGCTACCGTGACAGAATAGGCAATGTTGCTTTTCAGAGGTCTGCACCAGCTGCTGCAATATCACCAGAACCTGCAATTGTCACCACTGGTTTGGATGAGTCTACCATTGAATCTTATGAGAAGGTAATACTTGGGGAGAGTCGACGAGTGCCTGGACCTAATGATGAATGTTGTTGGATATGCTTGTCAGAATTGTATGCATACTCGTTTGAAGTTGTCAGTAAAGAAATACTTCCAAATCTACCAATAGCCATAGAAGGTGAGAAAAATCCTTATTGTGGCTATCCTGGCTTCAACTTAATTTGTACAAATGATAGCAAAACAGTCCTAAAACTTCCACACTCGGGAGAATTCTATGTAGGCAACATAAACTATCTCACACAACAGTTACAAGTCTATGACCCTCATGATTGCCTTCCCAAACGTCTTCTGAGCCTCAATCTTTCAGGTTCTCCCTTCACTCCCACTCTTAGTCGTAACTACACCTTCTTAAGCTGCTCATCTCAGAATAAAAGGCCACAATTCATTCCCATTGAGTGCCTCAGTAATTCAACAAATTTTGTATATGTCATTCCTTCAGTGAACATGTCCAATAATTATTCATTACCTGATTCTTGCAATGTTATTAAAAGGCTTTCAGCTCCAATTGCAAGGCCAGGGTGGTATAAGGAAAATCTCAGAGATGACCTTAGTGAAGATCTTCTATTAACATGGGATAAACCTGACTGCAGATATTGTGAATCACAAGAGCTAATGTGTGGATTTGAAAGCAGTAACAGCAATAGAGTTATCTGTTTCTCTGATTCCCAAACAGATAATGCGCAACGTGGACTTCAACTCTATAGAATAATCACATTATGCATTACTATACCAGCTTCCATCTTTATTATTTTAATTGGATGCTGTGTGTGCTACCGAGACAGAATAGGCAATACTCCTCCCAATCCCAGCAATAACATTGCTGCAATATCACTGGAACCTGCCATTGCCACCACTGGTCTGGATGAATCTACCATTGAATCATATGAGAAGGTAGTACTTGGGGAGAGTCGACGAGTTCCTGGACCCAATGATGGATGTTGTTGGATATGCTTGTCAGAGTATAACAGCAAAGAGACAATCAAATTGATTCCTGAATGCAAACACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACAACACATGCCCAGTTTGCCGCAACTCTCCCTACCCTCTTCCTGCTATTACCTCCAGTACCAGTAACCCTTGA 3084 0.4108 MGILILKLLFHFFIFPVIYAWNDCQFSLCGNNSILIRFPFQLEGGQRPYCGYPGFNLICTNDSKTVLKLPYSGEFYVRNINYLTQQIRVYDPADCLPRRLLSLNFSSSPFTTTFSRNYTFLSCSQNAGSQFIPIDCLSNSTNFVYVIPSVNMADSLPVSCYVIKRLSVPVAMPGRYEENLTDVLSEDLRLTWDKPVCRYCESQELMCGFESSNSNRVTCLSDFQTDDSQQGLRVFRIIALCISGPAAVFVILMASCVCYNDRITNATRNAASLRSAPAAILPEPTIVTVGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECNHCFHADCIDEWLRMNNTCPVLFHLFIFQVIYATNDCQFSLCGINSILIRFPFRLEGVQHSYCGYPGFNLVCTNDSKTVIKFPYSGEFYVRNINYLTQQIQVYDSHDCLPKRLLSLNLSGSPFTPTFSRNYTFISCPSQNEGSQFIPIECLSNSTSFVYAIPSVNMAYSLPDSCYVIKRLSSPVARPGWYEENLRDDLSDELRLMWDKPYCRYCEAQRLMCGFESNSSNRVICLSDYQAGNAKRGHRAFRIITLSIVVPAAIFMILIASSVCYRDRIGNVAFQRSAPAAAISPEPAIVTTGLDESTIESYEKVILGESRRVPGPNDECCWICLSELYAYSFEVVSKEILPNLPIAIEGEKNPYCGYPGFNLICTNDSKTVLKLPHSGEFYVGNINYLTQQLQVYDPHDCLPKRLLSLNLSGSPFTPTLSRNYTFLSCSSQNKRPQFIPIECLSNSTNFVYVIPSVNMSNNYSLPDSCNVIKRLSAPIARPGWYKENLRDDLSEDLLLTWDKPDCRYCESQELMCGFESSNSNRVICFSDSQTDNAQRGLQLYRIITLCITIPASIFIILIGCCVCYRDRIGNTPPNPSNNIAAISLEPAIATTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIKLIPECKHCFHADCIDEWLRMNNTCPVCRNSPYPLPAITSSTSNP. 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11445 1027 Pfam Wall-associated receptor kinase C-terminal 525 572 IPR032872 -
Seca4g11445 1027 Pfam Wall-associated receptor kinase C-terminal 159 220 IPR032872 -
Seca4g11445 1027 Pfam Wall-associated receptor kinase C-terminal 807 876 IPR032872 -
Seca4g11445 1027 CDD RING-H2_EL5-like 317 358 - -
Seca4g11445 1027 ProSiteProfiles Zinc finger RING-type profile. 318 358 IPR001841 -
Seca4g11445 1027 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 358 IPR046948 -
Seca4g11445 1027 Pfam Ring finger domain 318 358 IPR001841 -
Seca4g11445 1027 Pfam Ring finger domain 969 1011 IPR001841 -
Seca4g11445 1027 ProSiteProfiles Zinc finger RING-type profile. 969 1011 IPR001841 -
Seca4g11445 1027 CDD RING-H2_EL5-like 968 1011 - -
Seca4g11445 1027 SUPERFAMILY RING/U-box 317 358 - -
Seca4g11445 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 932 1015 IPR013083 -
Seca4g11445 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 360 IPR013083 -
Seca4g11445 1027 SMART ringv_2 968 1011 IPR011016 GO:0008270
Seca4g11445 1027 Pfam Wall-associated receptor kinase galacturonan-binding 374 441 IPR025287 GO:0030247
Seca4g11445 1027 Pfam Wall-associated receptor kinase galacturonan-binding 698 742 IPR025287 GO:0030247
Seca4g11445 1027 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Seca4g11445 1027 SMART ring_2 969 1010 IPR001841 -
Seca4g11445 1027 SMART ring_2 318 359 IPR001841 -
Seca4g11445 1027 SUPERFAMILY RING/U-box 963 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11445 Seca-Chr4 253546052 253557071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11445 379 672 C3H Transcription Factor Family AT2G25410 40.199 1.47e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11445 - - aprc:113851081 545.814