Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11443 ATGACTGCAAAGGGACAGAAATTTGTGAGGTTTGAAGATTGGAAGTCAGAGTCATCATCTTTAAGTATAGAGAAGAATGATTCTACAAGTGAAAAAACAAAAATTAAATCAAGTGTAAGTGGTGGATCAATAAAAAAATTGGTTTCTAGGTGCAATGTTCTTGATCCACAGGGGCCACTACTTCAGAAATGGAACAAGATTTTTGTAATAACATGTGTGATGGCAATCTCTGTGGACCCGCTGTTCTTTTACATCCCTGTGATTGATGACAATAGAAAATGCCTTGACTTGGATGGAAAATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACTGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTCATGATCTTTCTGCCATAGTCATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATCATTCCAATCCCAAAATGCTCAGCTCCATATGCAGCAAAGGATTTGTTGAAGTATACAATAATAGCCCAGTATGTGCCAAGAATTCTGCGGATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAGAGGTGCGGTGCTGGCGCGAACAGTTGAATAATACTGCCTTCTCTCATGATTCCTACCTGAGCTGTGGAGGAGGCAATCCTATTGTTCTATCAATTCTCAATAGTACTAGTTCTTGCCCTTACATTGACCCTGATAACATTGAAGACCAAACAGTTTTCAATTTTGGAATATTTATAGAAGCTGTAAAGTCTCGTGTGGTAGAGTCATCTAAAGATTTTCGTAAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCCACCTTTGGATTGGTTCTGTTTGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTGCCACCGGATGCTACCTGACTTCTTGAAGCAAAGAATTAGACGGTATGAACACTACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGGAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATACACAATTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAACTTGCTACTGCCACAACAAATGGTGGAAGAACAGGTTTCTTCAACTCCTCTGTGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTTTTGACATGGGCCTTGGATCCAAACTCCTCCTCAAATCTACCCATTTCAACTAGAACAGTGCAAACTATCTCAGAAGTTGAAGCTTTTGCTCTCATGCCTGAAGACTTGAAGTTTGTTGCTTCCCAATTTAGACGTCTTATTAACAGCAAACAACTCCAGCATACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCGTAGATACAAGAGAAAGAAGACTGATAGGTTATTTCGTGAAGCAGAAGAGAAGCTACATGCTTTAGAAAATGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACTGTATATGCATCAAGGTTTGCATCCAATGCATTACGGCCCTTGAGAAGTGGCAAACGCAACAGAATGCCACAGACACAGAGATTACTAATGCCTCAGAAGCCAGCTGAGCCAGATTTCACTACTAAAAAAAACTAG 2067 0.4045 MTAKGQKFVRFEDWKSESSSLSIEKNDSTSEKTKIKSSVSGGSIKKLVSRCNVLDPQGPLLQKWNKIFVITCVMAISVDPLFFYIPVIDDNRKCLDLDGKLKITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVHDLSAIVMRYLSSYFIIDILSIIPLPQMVILAIIPIPKCSAPYAAKDLLKYTIIAQYVPRILRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWREQLNNTAFSHDSYLSCGGGNPIVLSILNSTSSCPYIDPDNIEDQTVFNFGIFIEAVKSRVVESSKDFRKKFFYCFWWGLRNVSSVGQNLKTSTYVGEIIFAIFIATFGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMCHRMLPDFLKQRIRRYEHYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFENMDTQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISEVEAFALMPEDLKFVASQFRRLINSKQLQHTFRFYSLQWRTWGACFIQAAWRRYKRKKTDRLFREAEEKLHALENEEGSSPSFVATVYASRFASNALRPLRSGKRNRMPQTQRLLMPQKPAEPDFTTKKN. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11443 688 SUPERFAMILY Voltage-gated potassium channels 55 383 - -
Seca4g11443 688 Gene3D - 66 385 - -
Seca4g11443 688 SUPERFAMILY cAMP-binding domain-like 390 577 IPR018490 -
Seca4g11443 688 CDD CAP_ED 461 593 IPR000595 -
Seca4g11443 688 SMART cnmp_10 461 592 IPR000595 -
Seca4g11443 688 FunFam Cyclic nucleotide-gated ion channel 1 388 452 - -
Seca4g11443 688 Gene3D Helix hairpin bin 388 452 - -
Seca4g11443 688 FunFam Cyclic nucleotide-gated ion channel 1 459 577 - -
Seca4g11443 688 ProSiteProfiles cAMP/cGMP binding motif profile. 461 545 IPR000595 -
Seca4g11443 688 Coils Coil 614 634 - -
Seca4g11443 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 683 - -
Seca4g11443 688 MobiDBLite consensus disorder prediction 657 688 - -
Seca4g11443 688 Pfam Ion transport protein 64 389 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g11443 688 Gene3D Jelly Rolls 459 579 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11443 Seca-Chr4 253534191 253539646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11443 1 685 Ion Channels AT5G53130 62.948 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11443 K05391 - gmx:100795201 1130.55