Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11440 ATGGGATACTTACCAGAACAATCAACTGACTCAGACTTGAAATCACCCTTAACTCCAATGCCAGATGAGAACAGAGAATCAATTTTGTGTGGTTATGCTTCCTGGCTAGAAAAGCATCCTTCTGCTTTGGACAATTTTGAGGAAATGATGAGCATTGCCAAAGGGAAAGACATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCAATTGTAGATGACCCTGATCAGGCTTACATGAGTGATGCTATGCGTGCAGCTGTGCGTGAAGTTGCTAGTTGTTTTCCCACTGCAATTGTTAGTGGAAGGCGTAGGAGTAAGGTATATGAATTTGTCAAGTTAAGGAATGTCTATTATGCTGGAAGTCATGGTATGGATATATCAACCCCATTAGGCTCTTCAAAATGTGAAGATCAGAAGCATCAGATCAAAGCTGTTGATGAAAAGGGCAATCAAGTTGTTCTTTTTCATCCAGCAAAAGAATTTTTGGCAACAATCCAAGAGATAATTAAGGTTCTGAAAGAAAAAACCAAAAGAATAAAGGGCTCTATGGTTGAGGATAATATGTTCTGTGTCACTGTACACTACAGGCGTGTGAAAAAAGAAGAGGATGTTGGAGTTCTAAGAGAAATTGTGGAGTCAATTATGAAAGATTACCCGAATTTTCACATATCAGGAGGAAAAAAGGTTATGGAGATACGCCCAAATGTAAACTGGGACAAAGGCCAAGCTCTGATGTATTTGCTTGGCACTCTTGGATTTGACACCTCTAATGATGTTCTACCAATATACCTTGGGGATGACAGAACTGATGAAGATGCTTTTAAGGTTATTAGACACAATGGACGAGGTTTTCCCATCATTGTTTCTTCAACTGCTAAGGAGACAAAGGCTTCATATTCTCTGCGTGACCCTGCTGATGTGATGACTTTCTTGATTCGTTTAGCAAAATGGAAGAAGAGCCAGTAA 969 0.3963 MGYLPEQSTDSDLKSPLTPMPDENRESILCGYASWLEKHPSALDNFEEMMSIAKGKDIVVFLDYDGTLSPIVDDPDQAYMSDAMRAAVREVASCFPTAIVSGRRRSKVYEFVKLRNVYYAGSHGMDISTPLGSSKCEDQKHQIKAVDEKGNQVVLFHPAKEFLATIQEIIKVLKEKTKRIKGSMVEDNMFCVTVHYRRVKKEEDVGVLREIVESIMKDYPNFHISGGKKVMEIRPNVNWDKGQALMYLLGTLGFDTSNDVLPIYLGDDRTDEDAFKVIRHNGRGFPIIVSSTAKETKASYSLRDPADVMTFLIRLAKWKKSQ. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11440 322 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g11440 322 NCBIfam trehalose-phosphatase 57 316 IPR003337 GO:0003824|GO:0005992
Seca4g11440 322 FunFam Trehalose 6-phosphate phosphatase 165 322 - -
Seca4g11440 322 FunFam - 58 110 - -
Seca4g11440 322 Gene3D - 58 153 IPR023214 -
Seca4g11440 322 Gene3D - 158 322 IPR023214 -
Seca4g11440 322 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 26 321 IPR044651 GO:0004805|GO:0005992
Seca4g11440 322 SUPERFAMILY HAD-like 59 318 IPR036412 -
Seca4g11440 322 NCBIfam HAD-IIB family hydrolase 60 281 IPR006379 -
Seca4g11440 322 Pfam Trehalose-phosphatase 61 305 IPR003337 GO:0003824|GO:0005992
Seca4g11440 322 CDD HAD_TPP 59 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11440 Seca-Chr4 253457452 253459822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11440 60 312 Trehalose Biosynthesis Gene Families AT1G70290 24.627 2.84e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11440 K01087 - gmx:100799466 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11440 4 253457452 253459822 Seca4g11440 4 253457452 253459822 ECH