LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g11439	ATGCCCACAAAGCTTTTATCACAACTCCGTCTTCTCCAACTCCATCCCATGAAGTTCCACACTCTCCCCCTTCTCTCTCGATCCTTCTTATCCCCCTTCAAGTTCACCACTCACCTCGCCCTCCGCAACGCGCCGTTTCGGCCCCGCCTCTTATCCTCAGCCCGCGGGGCCCACATGGGCAGCAGGGAAAAGCTCCGGGCTTCCAAGAGTCTCATTGATGACGAGGCAGAGCTCAGCGACTGGGTCGACGAGTTGCGGACTGGTCGGGCCGAACGGTTCACCGAGCCCACGAGGTTCAGCCAGGGGCTCAACCGCGAAAGAGATGATAAAGAAAAAGGTGAATTCCGGCCAAGGAGGAATAGCAGGGCTTCTACGTTGGGGAAGAGAAAGGGTGGGGATTTGAGGAGAGGGAGACACAATGAGAATGCAAGAAGGAAGTTTCCATTGAAGAGTGATGATGATAATGAGGAGTTTGCAGGAAGAAAGTTTAAGGGTGGTGGCAGCATTGGAGAACTTCTTAGTGAAGAAGAAGTGTCAGAGGAAGAAGAAGAAGAAGAGAGTGGGGATGAGAGGATATTGAGCAAAAGTAAAAGTGCTTTGTTTGGTCAACAAAGGACTGAACCAACTCCAAGACCTTCTTCAACTTCAGGATCTGATTCTTATTTAAGCGACACCAGATTCGACGAATGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACTCTGCCAATAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCTAAAACAGGCACAGGGAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAAGTCAACTACAAGTGATCATGATCAAAAGCGGCCACCAATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACCAAACTGCTTAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCTTTAGAACAGAAGCGCATGCAAGCAAACCCTTGCCAGATCCTTGTTGCCACACCTGGACGGCTTAGAGATCATGTTGAAAATACTGCTGGTTTTGCAACTAGGCTTAGGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTATTAGACATGGGATTCCGCAGAGATATTGAGAAAATAATTGACGCAGTCCCTAAACAACGACAGACACTTATGTTTTCTGCTACCATTCCAGACGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGAGATCATGAATTTATTAATACAGTTCAAGAGGGTACCGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTAGACAAACATTTCTCTTCACTCTATGTTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGAACTTCTCAGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAATCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCGCGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTGATATATACTGAACTCCTTTCACTTTTGCAATGCATGTTCCGATGTGCACAAGCACGCGCGTACTCACACATTCAAGAAGTCATTAGAGAGGCTATTATTTGA	1776	0.4589	MPTKLLSQLRLLQLHPMKFHTLPLLSRSFLSPFKFTTHLALRNAPFRPRLLSSARGAHMGSREKLRASKSLIDDEAELSDWVDELRTGRAERFTEPTRFSQGLNRERDDKEKGEFRPRRNSRASTLGKRKGGDLRRGRHNENARRKFPLKSDDDNEEFAGRKFKGGGSIGELLSEEEVSEEEEEEESGDERILSKSKSALFGQQRTEPTPRPSSTSGSDSYLSDTRFDECSVSPLSLKGVKDAGYEKMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSTTSDHDQKRPPILVLVICPTRELACQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLRGVKVLVLDEADHLLDMGFRRDIEKIIDAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFSSLYVILKEHIADDVDYKVLVFCTTAMVTRLVAELLSELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVIYTELLSLLQCMFRCAQARAYSHIQEVIREAII.	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g11439	591	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	225	253	IPR014014	GO:0003724
	Seca4g11439	591	MobiDBLite	consensus disorder prediction	174	188	-	-
	Seca4g11439	591	PANTHER	RNA HELICASE	186	558	-	-
	Seca4g11439	591	CDD	DEADc_MSS116	232	441	-	-
	Seca4g11439	591	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	474	591	IPR001650	-
	Seca4g11439	591	Gene3D	-	174	440	IPR027417	-
	Seca4g11439	591	Pfam	DEAD/DEAH box helicase	250	427	IPR011545	GO:0003676\|GO:0005524
	Seca4g11439	591	CDD	SF2_C_DEAD	454	557	-	-
	Seca4g11439	591	SMART	helicmild6	497	577	IPR001650	-
	Seca4g11439	591	MobiDBLite	consensus disorder prediction	101	161	-	-
	Seca4g11439	591	Pfam	Helicase conserved C-terminal domain	475	558	IPR001650	-
	Seca4g11439	591	MobiDBLite	consensus disorder prediction	197	223	-	-
	Seca4g11439	591	MobiDBLite	consensus disorder prediction	92	223	-	-
	Seca4g11439	591	SMART	ultradead3	244	457	IPR014001	-
	Seca4g11439	591	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	216	434	IPR027417	-
	Seca4g11439	591	Gene3D	-	448	574	IPR027417	-
	Seca4g11439	591	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	378	558	IPR027417	-
	Seca4g11439	591	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	256	439	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g11439	Seca-Chr4	253443975	253449042	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g11439	225	557	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.686	7.75e-36	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g11439	-		-	gmx:100795739	771.541