Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11430 ATGGGGGAGAACATCAAGTGTGAGCAAGTTGGTCTCATTGATGAGTTAATGCAAGGAAAGAAGCTAGCAAAGCAGCTTTGTGACCATTTAGTCTCTTCACCATCATCATCTCATGTATCCAAGGAAGTCTTAATTGAGAAAATACTTTCATCCTATGAGAAAGCACTCACCATGCTCAAATGGAGGGCTAATGTGGGAGAAAGTAAGACCAACAATGGGAACATGATGGATTCCCATTGTTCTTTCACAAATGGGAGCCCCAAAAGTGAGGTGCTAGACCCAGAGGTTAAGCACAAAGATGTATTCAAGAAAAGAAAGACCATACCCATGCCCAGTTGGACAAAACAAGTGGTGTGCTCAGGAACAGCCCTTGAGAGGTCTCTGGATGATGGTTACAGCTGGAGAAAATATGGCCAGAAGGACATTCTTGGAGCTAAGTTTCCAAGAGGATATTATAGATGCACACATAGAAATGCCCAAGGTTGTCTTGCCACAAAACAAGTGCAAAAGTCAGATGAAGACGAAAAGATATTTGAGATTACCTACAAAGGAAGACACACATGCACCCAAGCTAGGAATTTAAACAAGGTATTCCCATCAACAACAAAGATTGGCTTGGCAGAAAATAAACACCAATCCCAACAAAAAAATCAACCACAAGAAGAGAAAACAGAACAACCCCAAGGGACAATTTTCTCTTTTGGATCAGATCTTGAAGTTAAATTAGAGGAGTTGGACAACAAGGAGGAAATCTTCCCATCATTTAGCTTTCATTCTCCATCAATAGGATCTGAAAATGAGGACAACAACATATTCTCAGATACCATGATTGAAAGTAACTTCATGGAAACCTTTTCCCCTGCTGCATTCATATCACCAGAGAATTCAGAATCAAACATTTTCTGTTTGTCACCATACCACTTGAGCAGCACAGGACTAGGCCTAAGTGTGCAAACCTCAGAATCTGATATCACAGAGATAGTTTCAGCCCCAACTTCAGTCACCAATTCCCCTATATTAGATTTCGATTTCTTCCTTGACAAGATGGATTTCGACACAGATTTCCTTATCAACAGCCCAGAATTTTGCTCTTGA 1095 0.4064 MGENIKCEQVGLIDELMQGKKLAKQLCDHLVSSPSSSHVSKEVLIEKILSSYEKALTMLKWRANVGESKTNNGNMMDSHCSFTNGSPKSEVLDPEVKHKDVFKKRKTIPMPSWTKQVVCSGTALERSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNAQGCLATKQVQKSDEDEKIFEITYKGRHTCTQARNLNKVFPSTTKIGLAENKHQSQQKNQPQEEKTEQPQGTIFSFGSDLEVKLEELDNKEEIFPSFSFHSPSIGSENEDNNIFSDTMIESNFMETFSPAAFISPENSESNIFCLSPYHLSSTGLGLSVQTSESDITEIVSAPTSVTNSPILDFDFFLDKMDFDTDFLINSPEFCS. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11430 364 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g11430 364 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g11430 364 Gene3D WRKY domain 114 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g11430 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 320 IPR044810 GO:0003700
Seca4g11430 364 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g11430 364 MobiDBLite consensus disorder prediction 209 230 - -
Seca4g11430 364 FunFam WRKY transcription factor 53 114 191 - -
Seca4g11430 364 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11430 Seca-Chr4 253344723 253347824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11430 13 292 WRKY Transcription Factor Family AT5G24110 37.676 9.87e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g11430 WRKY 1.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11430 - - aprc:113849885 530.406